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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTAGGGAGGCTGCAACTGGTCGAGGTGTTGTTTTCGCAACTGAAGCTTTACTTGCGCAACATGGGAAGTCAATCAAGGGTTTGACATTTGTTATTCAGgtaaaatattggattaaatcctttctatttctgttcttgatgcttagaaagttgggttatttaaatggaaaataaaaaaacttttcag

Basic information

species Vitis vinifera
transcript Vv16s0039g02750.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110383828|gb|EC948229.1|EC948229
EST:     TACTTGCGCAACATGGGAAGTCAATCAAGGGTTTGACATTTGTTATTCAG                         GGTTTTGGCAATGTTGGATCTTGGGTAGCAAGACTCATCGGTGAGAGAGGT
genomic: TACTTGCGCAACATGGGAAGTCAATCAAGGGTTTGACATTTGTTATTCAGgtaaaatatt ... aacttttcagGGTTTTGGCAATGTTGGATCTTGGGTAGCAAGACTCATCGGTGAGAGAGGT
EST: gi|30251187|gb|CB968920.1|CB968920
EST:     TACTTGCGCAACATGGGAAGTCAATCAAGGGTTTGACATTTGTTATTCAG                         GGTTTTGGCAATGTTGGATCTTGGGTAGCAAGACTCATCGGTGAGAGAGGT
genomic: TACTTGCGCAACATGGGAAGTCAATCAAGGGTTTGACATTTGTTATTCAGgtaaaatatt ... aacttttcagGGTTTTGGCAATGTTGGATCTTGGGTAGCAAGACTCATCGGTGAGAGAGGT
EST: gi|161720824|gb|FC069589.1|FC069589
EST:     TACTTGCGCAACATGGGAAGTCAATCAAGGGTTTGACATTTGTTATTCAG                         GGTTTTGGCAATGTTGGATCTTGGGTAGCAAGACTCATCGGTGAGAGAGGT
genomic: TACTTGCGCAACATGGGAAGTCAATCAAGGGTTTGACATTTGTTATTCAGgtaaaatatt ... aacttttcagGGTTTTGGCAATGTTGGATCTTGGGTAGCAAGACTCATCGGTGAGAGAGGT
EST: gi|161712921|gb|FC062394.1|FC062394
EST:     TACTTGCGCAACATGGGAAGTCAATCAAGGGTTTGACATTTGTTATTCAG                         GGTTTTGGCAATGTTGGATCTTGGGTAGCAAGACTCATCGGTGAGAGAGGT
genomic: TACTTGCGCAACATGGGAAGTCAATCAAGGGTTTGACATTTGTTATTCAGgtaaaatatt ... aacttttcagGGTTTTGGCAATGTTGGATCTTGGGTAGCAAGACTCATCGGTGAGAGAGGT
EST: gi|156737272|gb|EV241386.1|EV241386
EST:     TACTTGCGCAACATGGGAAGTCAATCAAGGGTTTGACATTTGTTATTCAG                         GGTTTTGGCAATGTTGGATCTTGGGTAGCAAGACTCATCGGTGAGAGAGGT
genomic: TACTTGCGCAACATGGGAAGTCAATCAAGGGTTTGACATTTGTTATTCAGgtaaaatatt ... aacttttcagGGTTTTGGCAATGTTGGATCTTGGGTAGCAAGACTCATCGGTGAGAGAGGT