1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGCTCACAATGCTAACGCAGCATCAGCTACATTCAGGAAAACATTTCCGCTTTATTTCTCCTTGACATTTGTACCATTTGTTGTTCTGCACTTACAAAAGgtacctcctccaaaggttgtttttgttgatttcaaatttcctgttttgtgcttttgcttggaagatgtaactgaattgtgtgcaatgcttttaaaccatc...
species | Vitis vinifera |
transcript | Vv16s0039g02700.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTTATTTCTCCTTGACATTTGTACCATTTGTTGTTCTGCACTTACAAAAG TTTATGGATACCCCTGCTCGTACCTGTTGGCATGCAATTAAGGGTGCTGTTEST: gi|110391701|gb|EC956697.1|EC956697
genomic: TTTATTTCTCCTTGACATTTGTACCATTTGTTGTTCTGCACTTACAAAAGgtacctcctc ... gccatttcagTTTATGGATACCCCTGCTCGTACCTGTTGGCACGCAATTAAGGGTGCTGTT
EST: TTGACATTTGTACCATTTGTTGTTCTGCACTTACAAAAG TTTATGGATACCCCTGCTCGTACCTGTTGGCATGCAATTAAGGGTGCTGTTEST: gi|294965652|gb|GW837251.1|GW837251
genomic: TTGACATTTGTACCATTTGTTGTTCTGCACTTACAAAAGgtacctcctc ... gccatttcagTTTATGGATACCCCTGCTCGTACCTGTTGGCACGCAATTAAGGGTGCTGTT
EST: TTTATTTCTCCTTGACATTTGTACCATTTGTTGTTCTGTACTTACAAAAG TTTATGGATACCCCTGCTCGTACCTGTTGGCACGCAATTAAGGGTGCTGTT
genomic: TTTATTTCTCCTTGACATTTGTACCATTTGTTGTTCTGCACTTACAAAAGgtacctcctc ... gccatttcagTTTATGGATACCCCTGCTCGTACCTGTTGGCACGCAATTAAGGGTGCTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTCACAATGCTAACGCAGCATCAGCTACATTCAGGAAAACATTTCCGCTTTATTTCTCCTTGACATTTGTACCATTTGTTGTTCTGCACTTACAAAAGgtacctcctccaaaggttgtttttgttgatttcaaatttcctgttttgtgcttttgcttggaagatgtaactgaattgtgtgcaatgcttttaaaccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggaagat