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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAATTATCAAAATTGCAGCAGGAAATGGCGTTGGAAAAATATTAGTTGGCAAgtgagtatacaactatgccccattgtcccctttaacagagtgcagttaatataaccattttcttcattatcttcaactgagatatggtagtttatagttc...

Basic information

species Vitis vinifera
transcript Vv16s0022g02320.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G29230.1 (Glycine max), 5'ss of exon 5
ATAATTATCAAAATTGCAGCAGGAAATGGCGTTGGAAAAATATTAGTTGGCAAgtgagtatacaactatgccccattgtcccctttaacagag-tgcagttaatataaccattttcttcattatcttcaactga--gatat-ggtagtttatagttc
||||| ||||||||||| || |||||||| |||||||||||  |||||||  ||| |||||   | | ||    ||| | |   ||||    | || |   |||   |  ||  | |  |   ||| | | |||  |  ||   |||  || |    
ATAATAATCAAAATTGCTGCTGGAAATGGTGTTGGAAAAATTCTAGTTGGACAgtaagtatcttaat-tggtttatttttcatattaattttgctgtaacaaatgggag-ataatatgtaagctctactagtgaatggcatcattaggataaaac--

upper sequence: Vv16s0022g02320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G38590.1 (Glycine max), 5'ss of exon 5
ATAATTATCAAAATTGCAGCAGGAAATGGCGTTGGAAAAATATTAGTTGGCAAgtgagtatacaactatgccccattgtcccctttaacagagtgcagttaatataaccattttcttcattatcttcaactga--gatat-ggtagtttatagttc
||||| ||||||||||| || |||||||| |||||||||||  | ||||| |||| | |||   | | ||     || |||  || ||     || |   |||   |  ||  | |  |   ||| | | |||  || ||   |||  || |    
ATAATAATCAAAATTGCTGCTGGAAATGGTGTTGGAAAAATTCTGGTTGGAAAgtaattatcttaatttgttgatttttccaattaaatttgctgtaaccaatgggag-ataatatgtaagctctactagtgaatgacatcattaggataaaac--