1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTCTTCACCTTCAACCACAAAACCGGATGAAACCAATGGATATTTTGCAGATGCTACTGATGATTCAGCTCAGATCAGGAAAAGATATAAAGAACCTTGGgtaaaaaaaatttccattcatctctgtttctctttgtctctctctctctctctatctctctgtcatacattggccatctgatttccctgatgccactgcag
species | Vitis vinifera |
transcript | Vv16s0013g02140.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGCTACTGATGATTCAGCTCAGATCAGGAAAAGATATAAAGATCCTTGG GATTATGTCCACTCTTACTATCCTACTACTCTTCCTTTGAGAAAGCCTCACEST: gi|349823346|gb|FQ402545.1|FQ402545
genomic: ATGCTACTGATGATTCAGCTCAGATCAGGAAAAGATATAAAGAACCTTGGgtaaaaaaaa ... gccactgcagGATTATGTCCACTCTTACTATCCTACTACTCTTCCTTTGAGAAAGCCTCAC
EST: ATGCTACTGATGATTCAGCTCAGATCAGGAAAAGATATAAAGAACCTTGG GATTATGTCCACTCTTACTATCCTACTACTCTTCCTTTGAGAAAGCCTCACEST: gi|349819443|gb|FQ412337.1|FQ412337
genomic: ATGCTACTGATGATTCAGCTCAGATCAGGAAAAGATATAAAGAACCTTGGgtaaaaaaaa ... gccactgcagGATTATGTCCACTCTTACTATCCTACTACTCTTCCTTTGAGAAAGCCTCAC
EST: ATGCTACTGATGATTCAGCTCAGATCAGGAAAAGATATAAAGAACCTTGG GATTATGTCCACTCTTACTATCCTACTACTCTTCCTTTGAGAAAGCCTCACEST: gi|349811580|gb|FQ409576.1|FQ409576
genomic: ATGCTACTGATGATTCAGCTCAGATCAGGAAAAGATATAAAGAACCTTGGgtaaaaaaaa ... gccactgcagGATTATGTCCACTCTTACTATCCTACTACTCTTCCTTTGAGAAAGCCTCAC
EST: ATGCTACTGATGATTCAGCTCAGATCGGGAAAAGATATAAAGAACCTTGG GATTATGTCCACTCTTACTATCCTACTACTCTTCCTTTGAGAAAGCCTCACEST: gi|349810641|gb|FQ402884.1|FQ402884
genomic: ATGCTACTGATGATTCAGCTCAGATCAGGAAAAGATATAAAGAACCTTGGgtaaaaaaaa ... gccactgcagGATTATGTCCACTCTTACTATCCTACTACTCTTCCTTTGAGAAAGCCTCAC
EST: ATGCTACTGATGATTCAGCTCAGATCAGGAAAAGATATAAAGAACCTTGG GATTATGTCCACTCTTACTATCCTACTACTCTTCCTTTGAGAAAGCCTCACEST: gi|349819206|gb|FQ412100.1|FQ412100
genomic: ATGCTACTGATGATTCAGCTCAGATCAGGAAAAGATATAAAGAACCTTGGgtaaaaaaaa ... gccactgcagGATTATGTCCACTCTTACTATCCTACTACTCTTCCTTTGAGAAAGCCTCAC
EST: ATGCTACTGATGATTCAGCTCAGATCAGGAAAAGATATAAAGAACCTTGG GATTATGTCCACTCTTACTATCCTACTACTCTTCCTTTGAGAAAGCCTCACEST: gi|349822833|gb|FQ398220.1|FQ398220
genomic: ATGCTACTGATGATTCAGCTCAGATCAGGAAAAGATATAAAGAACCTTGGgtaaaaaaaa ... gccactgcagGATTATGTCCACTCTTACTATCCTACTACTCTTCCTTTGAGAAAGCCTCAC
EST: ATGCTACTGATGATTCAGCTCAGATCAGGAAAAGATATAAAGAACCTTGG GATTATGTCCACTCTTACTATCCTACTACTCTTCCTTTGAGAAAGCCTCAC
genomic: ATGCTACTGATGATTCAGCTCAGATCAGGAAAAGATATAAAGAACCTTGGgtaaaaaaaa ... gccactgcagGATTATGTCCACTCTTACTATCCTACTACTCTTCCTTTGAGAAAGCCTCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTTCACCTTCAACCACAAAACCGGATGAAACCAATGGATATTTTGCAGATGCTACTGATGATTCAGCTCAGATCAGGAAAAGATATAAAGAACCTTGGgtaaaaaaaatttccattcatctctgtttctctttgtctctctctctctctctatctctctgtcatacattggccatctgatttccctgatgccactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC