Sequence
atgc intronic sequence ATGC exonic sequenceGACATGTGGAGGATTGTGCCCCGGAATCAACACAGTGATTCGGGAGATAGTATGTGGCTTGAATTATATGTATGGTGTTCATGATATACTTGGGATTGAGgttggttaatcgtgaactctatttccttccttaagtattatttttttaaatgatattatagtcattaaacttctttctttatgtgattttattaaaaaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0013g01140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G33820.1 (Glycine max), 5'ss of exon 5
GACATGTGGAGGATTGTGCCCCGGAATCAACACAGTGATTCGGGAGATAGTATGTGGCTTGAATTATATGTATGGTGTTCATGATATACTTGGGATTGAGgttggttaatcgtgaactctatttccttccttaagtattatttttttaaatgatattatagtcattaaacttctttctttatg--tgatt--ttattaaaaaaa--
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GACTTGTGGAGGATTATGCCCAGGAATTAATACAGTGATTAGGGAAATTGTATGTGGCTTGAACAACATGTATAATGTTGAAGATATACTTGGGATTGAGgtgagtt--ttgtgaaat-tataatattctgatctgactatctgttaaaat---ataatactccttgcttttgttaattaaagactaaatgattattggtttaaat
upper sequence: Vv16s0013g01140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S81_165V6.4 (Physcomitrella patens), 5'ss of exon 6
GACATGTGGAGGATTGTGCCCCGGAATCAACACAGTGATTCGGGAGATAGTATGTGGCTTGAATTATATGTATGGTGTTCATGATATACTTGGGATTGAGgttggttaatcgtgaactct-----atttccttccttaagtattatttttttaaatgatattatagtcatt--aaacttctttctttatgtgat---tttattaaaaaaa--------------------------------------------------------------------------------------
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AACTTGTGGAGGATTATGCCCCGGAATCAATACTGTGATTCGTGAGATTGTCTGTGGTCTGTGGACGCAATATGGTGTGCGCGAAATCTTTGGTATTGATgtaagtaacaagccatccatcaaaaatgtcattcttt---tattgatctcgaatgttgcgtcactaccttttcagggttacgagtacatatgataactgcgtcaaatttaaacctggtttcaacaatgcatagtataataagtctttaataagtggaaaacgtaaagcttaactcgaaattacattgcgctctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720049|gb|FC068340.1|FC068340EST: TATGTGGCTTGAATTATATGTATGGTGTTCATGATATACTTGGGATTGAG GGAGGATACAGAGGCTTTTACTCCAAAA-TAC-ATACAGTTGACACCTAA-
genomic: TATGTGGCTTGAATTATATGTATGGTGTTCATGATATACTTGGGATTGAGgttggttaat ... taaatttcagGGAGGATACAGAGGCTTTTACTCCAAAAATACCATTCAGTTGACACCTAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACATGTGGAGGATTGTGCCCCGGAATCAACACAGTGATTCGGGAGATAGTATGTGGCTTGAATTATATGTATGGTGTTCATGATATACTTGGGATTGAGgttggttaatcgtgaactctatttccttccttaagtattatttttttaaatgatattatagtcattaaacttctttctttatgtgattttattaaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaa