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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGACCATCAATTTGATGACAGATGTAGTGCAGCATGAACATCACAACAAGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaacatatcttgttctgtcgttttgttttaaggttctgctacatatggggtatctacagttggtatccaatgtgctagcctcactagctgactt...

Basic information

species Vitis vinifera
transcript Vv15s0048g02830.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g02830.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os02g45600.1 (Oryza sativa), 5'ss of exon 4
CTGGACCATCAATTTGATGACAGATGTAGTGCAGCATGAACATCACAACAAGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgctt----aacatatcttgttctgtcgttttgttttaaggttctgctacatatggggtatc-tacagttggtatccaatgtgctagcctcactagctgactt
 ||| |||||||| ||||| ||||||| ||| | |||||| |  |||| |||||||| || ||||||||||| |||||||||||||| |||||||||||||||  |     ||  ||| | | | | |   ||| || |     ||| |   || ||   | ||  | | |    ||  ||  | | |  |||  |    |    
TTGGGCCATCAATCTGATGGCAGATGTTGTGGAACATGAAAACTACAATAAGATGAACGCTCGCAACATTGCTATGGTTTTTGCACCAAACATGACTCAGgttattctcaaaatctatttggctttatttattttttcttgctatctacagaatttgctatttcacagactaatcatgtaacatacca-tctcttttatag----

upper sequence: Vv15s0048g02830.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os04g48790.1 (Oryza sativa), 5'ss of exon 4
CTGGACCATCAATTTGATGACAGATGTAGTGCAGCATGAACATCACAACAAGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaacatatcttgttctgtcgttttgttttaaggttctgc-tacatatggggtatctacagttggtatccaatgtgctagcctcactagctgactt
 ||| | |||||| ||||| | ||||| ||| |||||||| |  ||||||||||||||||  | ||||| || ||||| ||||| || ||||||||||||||   |  | | | ||   |   |  ||| |||  ||     | |  | | |        | |   ||| | ||||                         
TTGGGCTATCAATCTGATGGCTGATGTTGTGGAGCATGAAAACTACAACAAGATGAATGCTAGAAACATCGCTATGGTCTTTGCGCCAAACATGACTCAGgt-attagaaacaactc--tggattctttcgttagaaaagcatacacatacactaacctgcaatgtttgttttccag------------------------

upper sequence: Vv15s0048g02830.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G114192_T01 (Zea mays), 5'ss of exon 4
CTGGACCATCAATTTGATGACAGATGTAGTGCAGCATGAACATCACAACAAGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaacat--atcttgttctgtcgttttgttttaaggttctgctacatatggggtatctacagttggtatccaatgtgctagcctcactagctgactt
|||| | || ||| ||||| | ||||| ||  |||| ||| |  ||||||||||||| || || ||||| || ||||||||||| || || ||||||||||||   | |||    ||||  | |||| |    || ||       | | |||||      |  |||   | ||  |   ||||     || ||  | |    
CTGGGCAATTAATCTGATGGCCGATGTTGTAGAGCAAGAAAACTACAACAAGATGAACGCCCGGAACATCGCGATGGTTTTTGCGCCCAATATGACTCAGgttaactgacacgcgtcttactatgtcttcagattatacaa----ggttcatattatacctacacatacgctaatcctggtgc--atttctcttccag----

upper sequence: Vv15s0048g02830.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G42090.1 (Glycine max), 5'ss of exon 4
CTGGACCATCAATTTGATGACAGATGTAGTGCAGCATGAACATCACAACAAGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaacatatcttgttctgtcgttttgttttaaggttctgctacatatggggtatctacagttggtatccaatgtgctagcctcactagctgactt---
|||| | |||||||||||| |||| || ||  | ||||||||   |||||| |||||||| ||||| ||||| ||||||||||| || |||||||| ||||||    ||||| | |       |     ||| ||    |  || |   | | || |     ||    || |  | |  |||        ||| |||  |   
CTGGGCAATCAATTTGATGGCAGACGTTGTTGAACATGAACAGTTCAACAAAATGAATGCTCGCAATATTGCCATGGTTTTTGCGCCCAACATGACACAGgttagccaacat-tataagcaaataaagatgtattcttctgttgtttattgttggtttctctcaaacagt-ttaattaggctcattat-ttagttgaacttcc

upper sequence: Vv15s0048g02830.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G44820.1 (Glycine max), 5'ss of exon 4
CTGGACCATCAATTTGATGACAGATGTAGTGCAGCATGAACATCACAACAAGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaacatatcttgttctgtcgttttgttttaaggttctgctacatatggggtatctacagttggtatccaatgtgctagcctcactagctgactt--
|||| | |||||||||||| ||||||| ||  ||| ||||||   |||||| |||||||| |||||  |||| ||||||||||| || |||||||| ||||||    |||||     |    |  || || || |   |||  | |     |         ||||||   |||        ||        ||||  |||  
CTGGGCAATCAATTTGATGGCAGATGTTGTTGAGCGTGAACAGTTCAACAAAATGAATGCTCGCAATGTTGCCATGGTTTTTGCGCCCAACATGACACAGgttagccaacattataagcaaaggtgtattcttctgttgtttcg-tgttggtttctctcaaacagttta-atcaggctcattatttagttgagcttccttat

upper sequence: Vv15s0048g02830.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
CTGGACCATCAATTTGATGACAGATGTAGTGCAGCATGAACATCACAACAAGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaacatatcttgttctgtcgttttgttttaaggttctgctacatatggggtatcta-cagttggtatccaatgtgctagcctcactagctgactt----------------------------
|||| |  ||||||||||| | |||||||| ||  | |||     |||||||||||| || ||||| ||||||||||| ||||| ||||| |||||||||||   | | | |        |  | |  |  |   |      | | |  || |   | | |  || |    | |  || |   | |   |   |  | ||                             
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagtcatcttcgacctcccccttggatgctggcacttgaataccatttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag

upper sequence: Vv15s0048g02830.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S1_829V6.2 (Physcomitrella patens), 5'ss of exon 5
CTGGACCATCAATTTGATGACAGATGTAGTGCAGCATGAACATCACAACAAGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgt-tgcttaacatatcttgttctgtcgttttgttttaag-gttctgctacatatgggg---tatctacagttggtatccaatg--tgctagcctcactagctgactt-----------------------------------------------------------------
|||| |||| || |||||| | ||||| ||| |||  ||   |  ||||||||||||||| ||||| ||||||||||| || || ||||| ||||| ||||| ||    || | |   ||  | ||  | |||   |   ||| |    |  ||||     | | | ||  ||||| |  | |  ||||   |  |  || ||  ||                                                                 
CTGGGCCATTAACTTGATGGCCGATGTCGTGGAGCTGGAGTCTTTCAACAAGATGAATGCTCGCAATATTGCAATGGTATTCGCTCCTAATATGACACAGgtatggagcacttctgcagtggtctctatctgtagaagctgttgtatggcgaatggtcctcttttttcacatggtaactcaagattgcttatcctaaaaggtggttttccgttagcatgttatgtgtcaatgaaggttatccctttactgattcatatttactgccctgcag

upper sequence: Vv15s0048g02830.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
CTGGACCATCAATTTGATGACAGATGTAGTGCAGCATGAACATCACAACAAGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaacatatcttgttctgtcgttttgttttaaggttctgctacatatgggg-tatctacagt-tggtatccaatgtgctagcctcactagctgactt--------------------------------------------------------------------------------------------
|||| |||||||  | ||| | ||||| ||| |||  ||   | |||||||||||||||| ||||||||||| ||||||||||| || |||||||| |||||     | ||  ||||     |||  ||| |||| |   |    || |  |     | | ||  || | || |||  |||  |  | | |       || |                                                                                            
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgt-atagagcacctcttcggtggtctctttcttttgaaactagtttagagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag

upper sequence: Vv15s0048g02830.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S159_36V6.1 (Physcomitrella patens), 5'ss of exon 5
CTGGACCATCAATTTGATGACAGATGTAGTGCAGCATGAACATCACAACAAGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaacatatcttgttctgtcgttttgttttaaggttctgctacat-----atggggtatctacagttggtatccaatg--tgctagcctcactagctgactt---------------------------------------------------------------------------------
|||| |  ||||  ||||| | ||||| ||  |||| ||   || |||||| ||||||||||| || ||||||||||| ||||||||||||||||| |||||    | |  |  ||     ||| |         ||  || ||  || |     |   |   | || || |    |||  |   |   || ||| |   ||   ||                                                                                 
CTGGGCTGTCAACCTGATGGCCGATGTTGTCGAGCACGAGGTTCTCAACAAAATGAATGCACGAAATATTGCAATGGTGTTTGCACCTAACATGACGCAGgt-atgtgatgtcgctgcaattgt-gcgcctccccaaacttgtgacacttttcttaccagacttgtagagattcggtcctgtagttagcagactctccgactagatttctacgtgatctaaggaagtatttgtgttaagcttgttatatgaagtgaataacatattaactatgattcattacttgcag

upper sequence: Vv15s0048g02830.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S256_73V6.1 (Physcomitrella patens), 5'ss of exon 6
CTGGACCATCAATTTGATGACAGATGTAGTGCAGCATGAACATCACAACAAGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgt------tgcttaacatatcttgttctgtcg--ttttgttttaag---gttctgct---acatatggggtatc--tacagttggtatccaatgtgctagcctcac-tagctgactt----------------------------
 ||| |  ||||| ||||| | |||||||| ||  | |||     |||||||||||| || | ||||||||||||||| ||||| ||||||||||| |||||      | || |||   || |    ||  |   ||| || | |      |||||    | | || |    ||    || || | | | ||  | | ||    || |   | | ||                            
TTGGGCTGTCAATCTGATGGCTGATGTAGTTCAAGAGGAAACGTTCAACAAGATGAACGCTCACAACATTGCAATGGTATTTGCTCCTAACATGACCCAGgtacgtcattctgaacccctcctcagatgctgggctttattctgaacataatctgcccaaaaaaatcgtccttcgcctcatttcgaaacaaaaattccagttcgacattatttatttatttcttctccgacctttgtatttgcag

upper sequence: Vv15s0048g02830.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ22564 (Selaginella moellendorffii), 5'ss of exon 4
CTGGACCATCAATTTGATGACAGATGTAGTGCAGCATGAA-CATCACAACAAGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaacatatcttgttctgtcgttttgttttaaggttctgctacatatggggtatctacagttggtatccaatgtgctagcctcactagctgactt
|||| |  | ||| | ||| | || || |  ||| | ||  | ||| |||||||||||  | || ||||| |||||||||||||| || ||||||||||||||   ||  | | | |  || ||  | || |||||   ||| |  |   | |   |||| | |  ||| | ||| |                        
CTGGGCGCTGAATCTCATGGCCGACGTCGCCCAGGAGGAGGCGTCA-AACAAGATGAACTCCCGGAACATCGCAATGGTTTTTGCTCCCAACATGACTCAGgtacgtt--cctctttcatt-tggtgcttggtttt--tgttttcttttctgtaatgtatttccttttgctgtcccag-----------------------

upper sequence: Vv15s0048g02830.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ12967 (Selaginella moellendorffii), 5'ss of exon 4
CTGGACCATCAATTTGATGACAGATGTAGTGCAGCATGAA-CATCACAACAAGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaacatatcttgttctgtcgttttgttttaaggttctgctacatatggggtatctacagttggtatccaatgtgctagcctcactagctgactt
|||| |  | ||| | ||| | || || |  ||| | ||  | ||| |||||||||||  | || ||||| |||||||||||||| || ||||||||||||||   ||  | | | |  ||  ||  ||   ||||   ||| || |   | |   |||| | |  ||| | ||| |                        
CTGGGCGCTGAATCTCATGGCCGACGTCGCCCAGGAGGAGGCGTCA-AACAAGATGAACTCCCGGAACATCGCAATGGTTTTTGCTCCCAACATGACTCAGgtacgtt--cctctttcatttggttcttggttttt---gttttgttttctgtaatgtatttccttttgctgtcccag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349827287|gb|FQ421560.1|FQ421560
EST:     AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAG                         ATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
genomic: AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaac ... tttgatacagATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
EST: gi|349818738|gb|FQ409272.1|FQ409272
EST:     AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAG                         ATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
genomic: AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaac ... tttgatacagATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
EST: gi|349813829|gb|FQ414063.1|FQ414063
EST:     AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAG                         ATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
genomic: AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaac ... tttgatacagATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
EST: gi|352786649|gb|FQ479856.1|FQ479856
EST:     AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAG                         ATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
genomic: AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaac ... tttgatacagATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
EST: gi|351055937|gb|FQ453398.1|FQ453398
EST:     AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAG                         ATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
genomic: AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaac ... tttgatacagATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
EST: gi|349815160|gb|FQ410383.1|FQ410383
EST:     AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAG                         ATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
genomic: AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaac ... tttgatacagATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
EST: gi|351044711|gb|FQ443242.1|FQ443242
EST:     AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAG                         ATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
genomic: AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaac ... tttgatacagATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
EST: gi|349821690|gb|FQ413006.1|FQ413006
EST:     AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAG                         ATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
genomic: AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaac ... tttgatacagATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
EST: gi|351018882|gb|FQ425784.1|FQ425784
EST:     AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAG                         ATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
genomic: AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaac ... tttgatacagATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
EST: gi|349816176|gb|FQ403672.1|FQ403672
EST:     AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAG                         ATGGCCAATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
genomic: AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaac ... tttgatacagATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
EST: gi|349821932|gb|FQ413103.1|FQ413103
EST:     AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAG                         ATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
genomic: AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaac ... tttgatacagATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
EST: gi|351056085|gb|FQ453546.1|FQ453546
EST:     AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAG                         ATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
genomic: AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaac ... tttgatacagATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
EST: gi|349810311|gb|FQ401757.1|FQ401757
EST:     AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAG                         ATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC
genomic: AGATGAATGCACGCAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgttgcttaac ... tttgatacagATGGCCGATCCTTTGACTGCCTTGATTCATGCGGTGCAAGTTATGAACTTC