1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGCAGGAGTGTATCTAACTTGAGCAATGAGGAGATAAGGAAGCATGAAGACTGTATTGAGTTGGATAAGGAACCTGATAGGCTTGAGAGTTTAACTGGAGgtatttcaaatatcttgctttctttcggcttttttgagtttctattttattctgctactttgatctatggggcatctgacaagctacttgttgcag
species | Vitis vinifera |
transcript | Vv15s0048g02540.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGTATTGAGTTGGATAAGGAACCTGATAGGCTTGAGAGTTTAACTGGAG GAAAGATAATTACATTGGGATCAGAAGTTGCACCTGGCAATGAAGGTTATCEST: gi|161713481|gb|FC063106.1|FC063106
genomic: CTGTATTGAGTTGGATAAGGAACCTGATAGGCTTGAGAGTTTAACTGGAGgtatttcaaa ... cttgttgcagGAAAGATAATTACATTGGGATCAGAAGTTGCACCTGGCAATGAAGGTTATC
EST: CTGTATTGAGTTGGATAAGGAACCTGATAGGCTTGAGAGTTTAACTGGAG GAAAGATAATTACATTGGGATCAGAAGTTGCACCTGGCAATGAAGGTTATCEST: gi|219555215|gb|FG984916.1|FG984916
genomic: CTGTATTGAGTTGGATAAGGAACCTGATAGGCTTGAGAGTTTAACTGGAGgtatttcaaa ... cttgttgcagGAAAGATAATTACATTGGGATCAGAAGTTGCACCTGGCAATGAAGGTTATC
EST: CTGTATTGAGTTGGATAAGGAACCTGATAGGCTTGAGAGTTTAACTGGAG GAAAGATAATTACATTGGGATCAGAAGTTGCACCTGGCAATGAAGGTTATCEST: gi|110687475|gb|EE064923.1|EE064923
genomic: CTGTATTGAGTTGGATAAGGAACCTGATAGGCTTGAGAGTTTAACTGGAGgtatttcaaa ... cttgttgcagGAAAGATAATTACATTGGGATCAGAAGTTGCACCTGGCAATGAAGGTTATC
EST: CTGTATTGAGTTGGATAAGGAACCTGATAGGCTTGAGAGTTTAACTGGAG GAAAGATAATTACATTGGGATCAGAAGTTGCACCTGGCAATGAAGGTTATC
genomic: CTGTATTGAGTTGGATAAGGAACCTGATAGGCTTGAGAGTTTAACTGGAGgtatttcaaa ... cttgttgcagGAAAGATAATTACATTGGGATCAGAAGTTGCACCTGGCAATGAAGGTTATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAGGAGTGTATCTAACTTGAGCAATGAGGAGATAAGGAAGCATGAAGACTGTATTGAGTTGGATAAGGAACCTGATAGGCTTGAGAGTTTAACTGGAGgtatttcaaatatcttgctttctttcggcttttttgagtttctattttattctgctactttgatctatggggcatctgacaagctacttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA