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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAGgtatcatctttaaatcatcgttgtcgtcatcccactctttgtctctgtggaaaggcagtaagttcattgagaaaattttctttatgtcttgctttgcag

Basic information

species Vitis vinifera
transcript Vv15s0048g01810.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g01810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G030299_T02 (Zea mays), 5'ss of exon 5
GCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAGgtatcatc-tttaaatcatcgttgtcgtcatcccactctttgtctctgtggaaaggcagtaagttcattgagaaaattttctttatgtcttgct-ttgcag
 | | ||| || ||||||||||||||||||||||| ||||  |||||||| ||||||| ||| ||    ||||| ||||| || || |||||  |||  ||  || |    || | | |    |   ||      | ||  | | ||||     ||| |      |  ||    | |  || | ||||||
TCAGATTTGGGAAGGAAGCTTGCTGAAATGCATAAGGCTGCTAAATCTGATAAAGGATATGGTTTCCCGGTTGACAATACTATTGGAAGgtagtatcacttcgatgaaatatggccttaattgaggtttatcgggtctgctatgtcagtctccacatagtctccctgatccacctattatgttattgcag

upper sequence: Vv15s0048g01810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G01960.1 (Glycine max), 5'ss of exon 5
GCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAGgtat----catctttaa-atcatcgttgtcgtcatcccactctttgtctctgtggaaaggca--gtaagttcattgagaaaattttctttatgtcttgctttgcag----------------------------------------------------------------------------------------
 ||| | |||||||||||||||||||||||||||||||||||||||||   ||||| ||||| || ||||||||||| ||||| ||||||| |    || ||| |  || |  ||| || |  |     |  ||||   |||    |   |   | ||||| ||||     | ||||||  || || | | |                                                                                           
TCTGATCTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAGgtttaatgcaccttcatcatgaaagttatcattgttgttgtaattgttattgttatcatttatcatgagttc-ttgactctttcttctttccgttttacctaggcatgtgctacttgtcaggatatatcagctatcatcttttgtttgtttgttcgaattagtttctaattacgttatgtatattatgctgtag

upper sequence: Vv15s0048g01810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G08570.1 (Glycine max), 5'ss of exon 6
GCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAGgtatcatc--tttaaatcatcgttgtcgtcatc-ccactctttgtctctgtggaaaggcagtaagttcattgagaaaattttctttatgtcttgctttgcag
 ||| |||||||||||||||||||||||||||||||||||||||||||   ||||| ||||| || ||||||||||| ||||| || |||| | ||     |   ||||    ||  ||||        ||||| | |||    |         || ||   |||  ||| | || |  |  |        
TCTGATTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTAGTAAAGGGTTTGGTTTCGATGTTGATAACACCATTGGGAGgtttaatgcgccttcctcatgaaagttatcattgttgtaatttgtttttgttatca---------tttatcatgaatctttccattttaacaag--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28966833|gb|CB345866.1|CB345866
EST:     GGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAG                         CACTCCTCAGATAAACACTTGGACATCAGATTGGGTCAAGTTTTATGCAGA
genomic: GGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAGgtatcatctt ... tgctttgcagCACTCCTCAGATAAACACTTGGACATCAGATTGGGTCAAGTTTTATGCAGA
EST: gi|351033360|gb|FQ446592.1|FQ446592
EST:     GGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAG                         TACTCCTCAGATAAACACTTGGACATCAGATTGGGTCAAGTTTTATGCAGA
genomic: GGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAGgtatcatctt ... tgctttgcagCACTCCTCAGATAAACACTTGGACATCAGATTGGGTCAAGTTTTATGCAGA
EST: gi|30320371|gb|CD003633.1|CD003633
EST:     GGAAAATTTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAG                         CACTCCTCAGATAAACACTTGGACATCAGATTGGGTCAAGTTTTATGCAGA
genomic: GGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAGgtatcatctt ... tgctttgcagCACTCCTCAGATAAACACTTGGACATCAGATTGGGTCAAGTTTTATGCAGA
EST: gi|351044742|gb|FQ448996.1|FQ448996
EST:     GGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAG                         TACTCCTCAGATAAACACTTGGACATCAGATTGGGTCAAGTTTTATGCAGA
genomic: GGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAGgtatcatctt ... tgctttgcagCACTCCTCAGATAAACACTTGGACATCAGATTGGGTCAAGTTTTATGCAGA
EST: gi|18458320|gb|BM436598.1|BM436598
EST:     GGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAG                         CACTCCTCAGATAAACACTTGGACATCAGATTGGGTCAAGTTTTATGCAGA
genomic: GGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAGgtatcatctt ... tgctttgcagCACTCCTCAGATAAACACTTGGACATCAGATTGGGTCAAGTTTTATGCAGA
EST: gi|351013105|gb|FQ424810.1|FQ424810
EST:     GGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAG                         TACTCCTCAAATAAACACTTGGACATCAGATTGGGTCAAGTTTTATGCAGA
genomic: GGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAGgtatcatctt ... tgctttgcagCACTCCTCAGATAAACACTTGGACATCAGATTGGGTCAAGTTTTATGCAGA
EST: gi|110713565|gb|EE089595.1|EE089595
EST:     GGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAG                         CACTCCTCAGATAAACACTTGGACATCAGATTGGGTCAAGTTTTATGCAGA
genomic: GGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAGgtatcatctt ... tgctttgcagCACTCCTCAGATAAACACTTGGACATCAGATTGGGTCAAGTTTTATGCAGA
EST: gi|71881177|gb|DT030232.1|DT030232
EST:     GGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAG                         CACTCCTCAGATAAACACTTGGACATCAGATTGGGTCAAGTTTTATGCAGA
genomic: GGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAGgtatcatctt ... tgctttgcagCACTCCTCAGATAAACACTTGGACATCAGATTGGGTCAAGTTTTATGCAGA
EST: gi|28966778|gb|CB345811.1|CB345811
EST:     GGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAG                         CACTCCTCAGATAAACACTTGGACATCAGATTGGGTCAAGTTTTATGCAGA
genomic: GGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAGgtatcatctt ... tgctttgcagCACTCCTCAGATAAACACTTGGACATCAGATTGGGTCAAGTTTTATGCAGA