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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGCAAGACATTTTCTTATGGAAATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataaaaagtcctatgacagcagcatgtattgttgactcctttccaaatttgttactgacttatatcccacatatgcag

Basic information

species Vitis vinifera
transcript Vv15s0048g01290.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g01290.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G02240.1 (Glycine max), 5'ss of exon 4
GTGGGCAAGACATTTTCTTATGGAAATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataaaaagtcctatgacagcagcatgtattgttgactcctttccaaatt-tgttactgacttatatcccacatatgcag
|||||||||||||| |||||||||||||| |   || |||||||||||||||| ||||| |||||||| ||  | |||||         | ||         | || |||  ||||    ||  |||||| |||| |||||  |  ||  | || |||||
GTGGGCAAGACATTATCTTATGGAAATGGAA---GATTAGATGATGGCAAGGCTTTAGCCGAACTTGGTTTTGAAgtaaaagattttttttcttcttttctcgaatttatgcttgatcttttcacaaattctgttgctgacccagttcgtaaatgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34320559|gb|CF373313.1|CF373313
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|77580933|gb|DV219396.1|DV219396
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|110387106|gb|EC951749.1|EC951749
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|34416260|gb|CF415014.1|CF415014
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|352795349|gb|FQ476464.1|FQ476464
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|110692354|gb|EE071504.1|EE071504
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|110391304|gb|EC956269.1|EC956269
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|34415403|gb|CF414157.1|CF414157
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|83277004|gb|DV941012.1|DV941012
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|77582171|gb|DV220047.1|DV220047
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|71876098|gb|DT025153.1|DT025153
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|110423000|gb|EC989335.1|EC989335
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|34319505|gb|CF372259.1|CF372259
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|32249822|gb|CD715641.1|CD715641
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|27584880|gb|CB007575.1|CB007575
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|71871892|gb|DT020947.1|DT020947
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|110686597|gb|EE064413.1|EE064413
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|351043680|gb|FQ431033.1|FQ431033
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTAGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|110406199|gb|EC971762.1|EC971762
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|71871238|gb|DT020293.1|DT020293
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGG
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGG
EST: gi|30330289|gb|CD013551.1|CD013551
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|110686299|gb|EE063779.1|EE063779
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|110384243|gb|EC948668.1|EC948668
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|71872736|gb|DT021791.1|DT021791
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|32265218|gb|CD716807.1|CD716807
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|87585618|gb|DY474262.1|DY474262
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|30329674|gb|CD012936.1|CD012936
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|71870444|gb|DT019499.1|DT019499
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|349826849|gb|FQ418940.1|FQ418940
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|51050834|gb|CO818752.1|CO818752
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|110710456|gb|EE086805.1|EE086805
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
EST: gi|51989993|gb|CV179448.1|CV179448
EST:     ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAG                         ATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT
genomic: ATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataa ... acatatgcagATTGGGGATTACCTGGATGTGGCAATTCTGTAGAGACTAGAGAGAAGGTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGGCAAGACATTTTCTTATGGAAATGGGAAACGACTAGATGATGGCAAGGCATTAGCTGAACTTGGCTTCCAGgtaaacataaaaagtcctatgacagcagcatgtattgttgactcctttccaaatttgttactgacttatatcccacatatgcag

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