Sequence
atgc intronic sequence ATGC exonic sequenceACCCAAATTTCCATGTGGCTCTCACCTTCCGGAACAATAAAGAGCAACCTCTGAATTCTGGATTTATAGCAGTGAGGGGCACCCCTGATGGGATTCTAAGgtgtgtaatttgtgtttttatttcccttttattcctcttctaaggtttatagttatgttactattttcctttcatttttgaaatctaaaattttcagtta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0048g00310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G42210.1 (Glycine max), 5'ss of exon 3
ACCCAAATTTCCATGTGGCTCTCACCTTCCGGAACAATAAAGAGCAACCTCTGAATTCTGGATTTATAGCAGTGAGGGGCACCCCTGATGGGATTCTAAGgtgtgtaatttgtgttttt----atttcccttttattcctcttctaaggtttata-gttatgttactattttcctttcatttttgaaatctaaaattttcagtta
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ATCCTAATTTTCATGTGGCTCTGACCTTTAGGAACAATAAGGCTCAACCTTTGAATTCAGGATTCATTGCAGTAAGGGGTACCCCGGAAGCAATTTTAAGgtg-atggtctgcacgctctgtagtttttgtttaactgcaattgtgtcatataggcactataaaaaaaatagtggaatgattgtgtaattgactagtctct----
upper sequence: Vv15s0048g00310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G45320.1 (Arabidopsis thaliana), 5'ss of exon 4
ACCCAAATTTCCATGTGGCTCTCACCTTCCGGAACAATAAAGAGCAACCTCTGAATTCTGGATTTATAGCAGTGAGGGGCACCCCTGATGGGATTCTAAGgtgtgtaatttgtgtttttatttcccttttattcctctt----ctaaggtttatagttatgttactattttcctttcatttttgaaatctaaaattttcagtta-
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ATTCAAGCTTCCATCTAGCACTCACATTCAGGAACAATAAAGATCAGCCGTTGAATTCAGGATTTATAGCAGTGAGAGGCACACGTGAAGGGATCCTAAGgtttgcatttatccttcgtaaacttgaagcaaatctattatagttaaaagacatacttgtctcagcatattgatgac-tttgtcttacatgtgatcccaatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161706291|gb|FC055456.1|FC055456EST: CTGAATTCTGGATTTATAGCAGTGAGGGGCACCCCTGATGGGATACTAAG GGCAAAACTTTTTCTGCAAGAAGTACTGAAAGTTTACAGTTCTAGATTCAT
genomic: CTGAATTCTGGATTTATAGCAGTGAGGGGCACCCCTGATGGGATTCTAAGgtgtgtaatt ... atgggtgcagGGCAAAACTTTTTCTGCAAGAAGTACTGAAAGTTTACAGTTCTAGATTCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACCCAAATTTCCATGTGGCTCTCACCTTCCGGAACAATAAAGAGCAACCTCTGAATTCTGGATTTATAGCAGTGAGGGGCACCCCTGATGGGATTCTAAGgtgtgtaatttgtgtttttatttcccttttattcctcttctaaggtttatagttatgttactattttcctttcatttttgaaatctaaaattttcagtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctcttc