1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAACATAATAATTGCTGCAGTAGTAGCAATGAAAGCACTCCAAGGTCTTGGCCAATTTGTAAAACACATGATCAGGGAAATCAAAGCTTGCCAATACGAGgttagcactttttttataagaattgaattattagaaatgcatatagatggaaactgatggtaaaatttgaattgtctaattcttaaaatgcatctaagtt...
species | Vitis vinifera |
transcript | Vv15s0046g02260.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCCAATTTGTAAAACACATGATCAGGGAAATCAAAGCTTGCCAATACGAG TTATGCCAGATTTTGCTCAAGTGTACAGCTTCATCGGTAGTGTTTTTGACCEST: gi|351033032|gb|FQ446385.1|FQ446385
genomic: GCCAATTTGTAAAACACATGATCAGGGAAATCAAAGCTTGCCAATACGAGgttagcactt ... tttgctgcagTTATGCCAGATTTTGCTCAAGTGTACAGCTTCATCGGTAGTGTTTTTGACC
EST: GCCAATTTGTAAAACACATGATCAGGGAAATCAAAGCTTGCCAATACGAG TTATGCCAGATTTTGCTCAAGTGTACAGCTTCATCGGTAGTGTTTTTGACC
genomic: GCCAATTTGTAAAACACATGATCAGGGAAATCAAAGCTTGCCAATACGAGgttagcactt ... tttgctgcagTTATGCCAGATTTTGCTCAAGTGTACAGCTTCATCGGTAGTGTTTTTGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACATAATAATTGCTGCAGTAGTAGCAATGAAAGCACTCCAAGGTCTTGGCCAATTTGTAAAACACATGATCAGGGAAATCAAAGCTTGCCAATACGAGgttagcactttttttataagaattgaattattagaaatgcatatagatggaaactgatggtaaaatttgaattgtctaattcttaaaatgcatctaagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatgca