Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCTCTTCCATCTGGGGGCATATTAACCCCAAGGGGTCTGCAGCTTCTTGGTCTTTCTTGTTTAGGCTCTAGTACCGGTTTTGAGCGATTGCACTATATgtaaggaattatttgtataccaatttgtttcttaagtacttgattcttcaagttgagcttgtttatactatctaaacatag

Basic information

species Vitis vinifera
transcript Vv15s0046g02160.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g02160.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G61540.1 (Arabidopsis thaliana), 5'ss of exon 5
TGCCTCTTCCATCTGGGGGCATATTAACCCCAAGGGGTCTGCAGCTTCTTGGTCTTTCTTGTTTAGGCTCTAGTACCGGTTTTGAGCGATTGCACTATATgtaaggaattatttgtataccaatttgtttcttaagtacttgattcttcaagttgagcttgtttatactatctaaacatag
| ||||| ||||| || |||||  | || || | |||||| ||   ||||||||||||| ||||||| || ||||| |||||||||||  |||| ||||||||||   |||  |  ||    ||      | | |       ||  |    ||| |   ||    |  ||  | | |||||
TACCTCTCCCATCAGGAGGCATTCTTACTCCTAAGGGTCTTCAAACTCTTGGTCTTTCTGGTTTAGGATCAAGTACTGGTTTTGAGCGCCTGCATTATATgtaagagtttagcttaatttttatcaaccacctcac------atgttctgtgttaaatctggccttcttaattgatcatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110375135|gb|EC940096.1|EC940096
EST:     GGTCTTTCTTGTTTAGGCTCTAGTACCGGTTTTGAGCGATTGCACTATAT                         GCTTGAGAGGGTCTGGGATCCTATAATCATCCCAGGAGCGCAAAAACAGAT
genomic: GGTCTTTCTTGTTTAGGCTCTAGTACCGGTTTTGAGCGATTGCACTATATgtaaggaatt ... ctaaacatagGCTTGAGAGGGTCTGGGATCCTATAATCATCCCAGGAGCGCAAAAACAGAT