Sequence
atgc intronic sequence ATGC exonic sequenceTTTAATCATTTGCTTGAGCATCAGGCTCATCTCACGAATTATCATGTTTCTCCAAAAGTTCCTTTGGCGCCCATACAGAATGGAATCCATCCCATGCCTGgtaagtattgactttacaattttatagtcatgcaaaagctcaaattacctatactatttcaatgcttgtgtgagcactgttatataaactattttcatga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g00990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G02860.2 (Glycine max), 5'ss of exon 5
TTTAATCATTTGCTTGAGCATCAGGCTCATCTCACGAATTATCATGTTTCTCCAAAAGTTCCTTTGGCGCCCATACAGAATGGAATCCATCCCATGCCTGgtaagta-ttgactttacaattttatagtcatgcaaaagctcaaattacctatactatttcaatgcttgtgtgagcactgttatataaactattttcatga---
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TTCAATCATTTACTTGAGCATCAGTATCATCTGATGAAGTGTCCAATGCCTGcaaaggttccattggctccaatacagaatggaatccatccaatgcctggtaaattcttgccctctcatcagtgtgtatatgtgtgtgtttaaat---ccaaaatatcttcacctctttgcaatttgcacgacttaaagtaaact-gtgagtt
upper sequence: Vv15s0046g00990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G06230.1 (Glycine max), 5'ss of exon 6
TTTAATCATTTGCTTGAGCATCAGGCTCATCTCACGAATTATCATGTTTCTCCAAAAGTTCCTTTGGCGCCCATACAGAATGGAATCCATCCCA-TGCCTGgtaagtattgactttacaattttatagtcatgcaaaagctcaaatt---acctatactatttcaatgcttgtgtgagcactgttatataaactattttcatga
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-TCAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGcaaaggttccattggctccaatacagaatggaatccatcccaatgcctggtaaattcttgccctctcatcagtcag-catatgagtgtgtgtgtttgaatccgaaatatattcacgtctttgcaatttgcatgacttaaagtaaact-atg-
upper sequence: Vv15s0046g00990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G44420.1 (Glycine max), 5'ss of exon 5
TTTAATCATTTGCTTGAGCATCAGGCTCATCTCACGAATTATCATGTTTCTCCAAAAGTTCCTTTGGCGCCCATACAGAATGGAATCCATCCCATGCCTGgtaagtattgactttaca----attttatagtcatgcaaaagctcaaattacctatactatttcaatgcttgtgtgagcactgttatataaactattttcatga
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TTCAATCATTTGCTTGAGCATCAGTATCATATGATGAAGTATCCCTTGCCTACAAAGATTCCACTGGCTCCCATACAGAATGGAGTCCATCCAATGCCTGgtaaattcttgcctcatattgtattctcttctcatgttatgcaataattttctgagtttctgactattattcttagtacactgccaaattcctagtcaac----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110703971|gb|EE081373.1|EE081373EST: TCCAAAAGTTCCTTTGGCGCCCATACAGAATGGAATCCATCCCATGCCTG TTAACAACTTACCAATGGGATATCCCGTTCTTCAACAACCTCCTATCCCGG
genomic: TCCAAAAGTTCCTTTGGCGCCCATACAGAATGGAATCCATCCCATGCCTGgtaagtattg ... ttcggtgcagTTAACAACTTACCAATGGGATATCCCGTTCTTCAACAACCTCCTATCCCGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTAATCATTTGCTTGAGCATCAGGCTCATCTCACGAATTATCATGTTTCTCCAAAAGTTCCTTTGGCGCCCATACAGAATGGAATCCATCCCATGCCTGgtaagtattgactttacaattttatagtcatgcaaaagctcaaattacctatactatttcaatgcttgtgtgagcactgttatataaactattttcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaaag