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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTGGCACGAGTTCAACAATTTCCAGTTTCAGTTGACTTCACATCAGgtatgttgctggtatataaaccgttgctgctctttttagtagttttactgctttgtctatgaatctttcaattgtttacaaagagttttctgtcaacag

Basic information

species Vitis vinifera
transcript Vv15s0046g00950.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g00950.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G027857_T01 (Zea mays), 5'ss of exon 5
GTACTGGCACGAGTTCAACAATTTCCAGTTTCAGTTGACTTCACATCAGgtatgttgctggtatataaaccgttgctgctctttttagtagttttactgctttgtctatgaatctttcaattgtttacaaagagttttctgtcaacag-
||||||||| || ||||||| ||| |||||||||||||| || |||||||||  ||             ||  ||     ||   |   ||  | ||      |    | | | ||       ||||        ||  ||    |   
GTACTGGCATGAATTCAACAGTTTTCAGTTTCAGTTGACATCTCATCAGgtaaatttacttcggccctgcctatgaatacctaactgtcagaataacaatgcagcaacttattgttgttgcactttaagtttgtgttcttgctgccccc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30135611|gb|CB920949.1|CB920949
EST:     GTACTGGCACGAGTTCAACAATTTCCAGTTTCAGTTGACTTCACATCAG                         GAAGAGAGAGATGCAATTCTGGCCAAGATTGAAGTGTCACAGGCACATCTA
genomic: GTACTGGCACGAGTTCAACAATTTCCAGTTTCAGTTGACTTCACATCAGgtatgttgct ... ctgtcaacagGAAGAGAGAGATGCAATTCTGGCCAAGATTGAAGTGTCACAGGCACATCTA
EST: gi|110724261|gb|EE099932.1|EE099932
EST:     GTACTGGCACGAGTTCAACAATTTCCAGTTTCAGTTGACTTCACATCAG                         GAAGAGAGAGATGCAATTCTGGCCAAGATTGAAGTGTCACAGGCACATCTA
genomic: GTACTGGCACGAGTTCAACAATTTCCAGTTTCAGTTGACTTCACATCAGgtatgttgct ... ctgtcaacagGAAGAGAGAGATGCAATTCTGGCCAAGATTGAAGTGTCACAGGCACATCTA
EST: gi|34548484|gb|CF516716.1|CF516716
EST:     GTACTGGCACGAGTTCAACAATTTCCAGTTTCAGTTGACTTCACATCAG                         GAAGAGAGAGATGCAATTCTGGCCAAGATTGAAGTGTCACAGGCACATCTA
genomic: GTACTGGCACGAGTTCAACAATTTCCAGTTTCAGTTGACTTCACATCAGgtatgttgct ... ctgtcaacagGAAGAGAGAGATGCAATTCTGGCCAAGATTGAAGTGTCACAGGCACATCTA