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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTTCAGATATGGTTCTGGCAGATGACAATTTCAGTACCATAGTTTCAGCCGTTGCAGAGGGTCGCTCAATTTATAACAACATGAAGGCTTTTATTAGgtatatatgtcttaagttcgttttttttttccctttcgggtagtcaacatctaaccttcagtgacctcaatatgcag

Basic information

species Vitis vinifera
transcript Vv15s0046g00040.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g00040.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G02490.1 (Glycine max), 5'ss of exon 7
AAGCTTCAGATATGGTTCTGGCAGATGACAATTTCAGTACCATAGTTTCAGCCGTTGCAGAGGGTCGCTCAATTTATAACAACATGAAGGCTTTTATTAGgtatat-atgtcttaagttcgttttttttttccctttcgggtagtcaacatctaaccttca-gtgacctcaatatgcag---
|||||||||||||||| || |||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||| | ||||| |||||| | ||||||    || || |||  |||    |  |  |  || ||| | | ||||||  |   |||||| | |     
AAGCTTCAGATATGGTGCTTGCAGATGACAATTTTAGTACCATAGTTTCAGCTGTTGCTGAGGGTCGCTCTATTTATAATAACATGAAGTCATTTATCAGgtatgttatgtctc---ttggtatttcattttgaatatgatttatctacaccaatccttcacatttactcaatcttcttcag

upper sequence: Vv15s0046g00040.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G05890.1 (Glycine max), 5'ss of exon 5
AAGCTTCAGATATGGTTCTGGCAGATGACAATTTCAGTACCATAGTTTCAGCCGTTGCAGAGGGTCGCTCAATTTATAACAACATGAAGGCTTTTATTAGgtatat-atgtcttaagttcgttttttttttccctttcgggtagtcaacatctaaccttca-gtgacctcaatatgcag---
|||||||||||||||| || |||||||||||||| ||||||||||||| ||| ||||| ||||||||||| |||||||| ||||||||  | ||||| |||||| | |||| |    || || |||  |||    || |  |  || ||  |    |||||  |   |||||| | |     
AAGCTTCAGATATGGTGCTAGCAGATGACAATTTTAGTACCATAGTTTTAGCTGTTGCTGAGGGTCGCTCTATTTATAATAACATGAAATCATTTATCAGgtatgttatgtttc---ttggtatttcattttgaatttgatttatctactccagttcttcacatttactcaatcttcttcag

upper sequence: Vv15s0046g00040.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S80_36V6.1 (Physcomitrella patens), 5'ss of exon 6
AAGCTTCAGATATGGTTCTGGCAGATGACAATTTCAGTACCATAGTTTCAGCCGTTGCAGAGGGTCGCTCAATTTATAACAACATGAAGGCTTTTATTAGgtat-atatgtcttaagttcgttttttttttccctttcgggtagtcaacat-ctaaccttca-gtgacctcaatatgcag-----------------------
||||| | || ||||| |||||||| ||||||||||| || || ||  |||| |||| |||||||||  ||||||| ||||||||||| || || || |||| | ||||   |  | | |  |    ||| |    |     ||||   || ||   ||||| |  |   ||  |                            
AAGCTGCTGACATGGTGCTGGCAGACGACAATTTCAGCACAATCGTGGCAGCTGTTGGAGAGGGTCGTGCAATTTACAACAACATGAAAGCCTTCATCAGgtttcatattgttccactcccgtcaactttacgtaatgcatgagtccctattctcgtcttcaagctattccagaacttgaactgcatcatgtggattctacag

upper sequence: Vv15s0046g00040.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S248_28V6.1 (Physcomitrella patens), 5'ss of exon 6
AAGCTTCAGATATGGTTCTGGCAGATGACAATTTCAGTACCATAGTTTCAGCCGTTGCAGAGGGTCGCTCAATTTATAACAACATGAAGGCTTTTATTAGgtatata----tgtcttaagttcgttttttttttc----cctttcgggtagtcaacatct-aaccttcagtgacctca---atatgcag
| ||  | || ||||| || |||||||||||||| || || || ||  ||||||||| ||| ||||| || || || |||||||||||||| || |||||||   |     | |  ||||   | ||||||          ||| ||  | | |  | |  ||  || | |||  |     || | |||
AGGCAGCCGACATGGTGCTTGCAGATGACAATTTTAGCACTATTGTGGCAGCCGTTGGAGAAGGTCGTTCTATATACAACAACATGAAGGCCTTCATTAGgtgcgtgattttatactaaggatgattttttgagtggagtattttggaaattgagtaccagaagtttgactgaagttgtggatctacag

upper sequence: Vv15s0046g00040.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ35276 (Selaginella moellendorffii), 5'ss of exon 6
AAGCTTCAGATATGGTTCTGGCAGATGACAATTTCAGTACCATAGTTTCAGCCGTTGCAGAGGGTCGCTCAATTTATAACAACATGAAGGCTTTTATTAGgtatatatgtcttaagttcgttttttttttccctttcgggtagtcaacatctaaccttcagtgacctcaatatgcag
||||| |||| |||||  ||||||| || || ||||| || || || |||||||||||||| ||||| ||||| || ||||||||||| |||||||| ||||| |   ||       | ||||     |       ||   ||| ||   || |   |      |  | |   |   
AAGCTGCAGACATGGTGTTGGCAGACGATAACTTCAGCACGATTGTATCAGCCGTTGCAGAAGGTCGTTCAATCTACAACAACATGAAAGCTTTTATAAGgtaaa---gttcctgcgtggtttgagaatgttgaaacgacgagtgaag--ctgattcttttcatctgctaccag---

upper sequence: Vv15s0046g00040.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ24210 (Selaginella moellendorffii), 5'ss of exon 6
AAGCTTCAGATATGGTTCTGGCAGATGACAATTTCAGTACCATAGTTTCAGCCGTTGCAGAGGGTCGCTCAATTTATAACAACATGAAGGCTTTTATTAGgtatatatgtcttaagttcgttttttttttccctttcgggtagtcaacatctaaccttcagtgacctcaatatgcag
||||| |||| |||||  ||||||| || || ||||| || || || |||||||||||||| ||||| ||||| || ||||||||||| |||||||| ||||| |   ||     ||| |    | ||          |  |  |    |||   | || |  |||           
AAGCTGCAGACATGGTGTTGGCAGACGATAACTTCAGCACGATTGTATCAGCCGTTGCAGAAGGTCGTTCAATCTACAACAACATGAAAGCTTTTATAAGgtaaa---gttcctggtttgagactgttgaaatgacgagtgaagctgattcttttcatctgctaccag---------