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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTATATTTGAGATAAACTGCTCAAAGGATATCAAAGTTCAGGGCATTATTGGTCCCTGTGCATCTCTTGAAAAGgtataatttgaagtgttctagtggtctctcttttctgctggttgcatttcacatgtttagtcattggtgcttttgtgcag

Basic information

species Vitis vinifera
transcript Vv15s0045g00540.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os08g36994.1 (Oryza sativa), 5'ss of exon 7
TGGTATATTTGAGATAAACTGCTCAAAGGATATCAAAGTTCAGGGCATTATTGGTCCCTGTGCATCTCTTGAAAAGgtataatttgaagtgttcta-gtggtctctcttttct-----gctggttgcatttcacatgtttagtcattggtgcttttgt-gcag---------
|||||||||||| || ||||||||||||||| ||||| |||| ||||||||||| || ||| | || || || |||||||| | || |||     |  || | |     || |     | || | | |||  | || ||||    ||  | ||  |||    |         
TGGTATATTTGAAATTAACTGCTCAAAGGATGTCAAAATTCAAGGCATTATTGGACCTTGTACTTCCCTGGAGAAGgtatagtatgtagttaatgacatgatttaaacattttagaatgatgatggtattatatatttttatgggttttttctcatgttattgtttgtacag

upper sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G09230.1 (Glycine max), 5'ss of exon 5
TGGTATATTTGAGATAAACTGCTCAAAGGATATCAAAGTTCAGGGCATTATTGGTCCCTGTGCATCTCTTGAAAAGgtataatttgaagtgttctagtggtctctcttttctgctggttgcatttcacatgtttagtcattggtgcttttgtgcag----
||| |||||||||||||||||||| |||||  | ||||| || || |||||||| || ||||||||||||||||||||||   ||||||   ||       |||| | | || ||  |  |     ||||   |  | ||  ||   |||||        
TGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTCCAAGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGgtatgtcttgaagatctc-----acctctttctgctacttatccc-cccaacatagatgcttatctgtttctttgtatctgtag

upper sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G22740.1 (Glycine max), 5'ss of exon 5
TGGTATATTTGAGATAAACTGCTCAAAGGATATCAAAGTTCAGGGCATTATTGGTCCCTGTGCATCTCTTGAAAAGgtataatttgaagtgttctagtggtctctcttttctgctggttgcatttcacatgtttagtcattggtgcttttgtgcag
||| |||||||||||||||||||| |||||  | ||||| || || |||||||| || ||||||||||||||||||||||   |  |||   ||  |   | |     | ||  |     ||    | ||| |||     || |   | | |||||
TGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTCCAAGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGgtatgtctataagaactc--gcctttttctgctacttatccccacaacatagatgcttatctgctgctttgtatttgcag

upper sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G21630.1 (Arabidopsis thaliana), 5'ss of exon 4
TGGTATATTTGAGATAAACTGCTCAAAGGATATCAAAGTTCAGGGCATTATTGGTCCCTGTGCATCTCTTGAAAAGgtataatttgaagtgttctagtggtctctcttttctgctggttgcatttcacatgtttagtcattggtgcttttgtgcag
|||||||||||| || ||||||||||||||||||||||||||||| |||||||| || || |||||||| |||||||||| || | ||   |  ||  ||  ||| ||||    |     |  ||    || | | |   || || || | |||||
TGGTATATTTGAAATTAACTGCTCAAAGGATATCAAAGTTCAGGGAATTATTGGCCCTTGCGCATCTCTCGAAAAGgtatcatataaaac-tgttaaaggcatctatttttcctt-----cgcttattgtgatcaatatctgatgattatttgcag