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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGCTGCCAAGGTTCAGGAATGAAGATTACAACCCGACAGATTGCACCAGGCATGATTCAACAAATGCAACATGTCTGTCATGAATGCAGAGGGTCAGgtaattaactgaaacctatttttgtttcatgttttttgtttttcaaattttttttccttaattttttcaaaattttttatgcctgtatcttatttggttgattcag

Basic information

species Vitis vinifera
transcript Vv15s0021g02090.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g02090.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os04g46390.3 (Oryza sativa), 5'ss of exon 5
TATGGCTGCCAAGGTTCAGGAATGAAGATTACAACCCGACAGATTGCACCAGGCATGATTCAACAAATGCAACATGTCTGTCATGAATGCAGAGGGTCAGgtaattaactgaaacctatttttgtttcatgttttttgtttttcaaattttttttcctt--aattttttcaaaattttttatgc-ctgtatcttatttggttgattcag---
||||| || || |||  |||||||| || || ||  |||||||| | || ||||||||||||||| |||||   |||||||| |||||||||||| |||||||   ||| |   |     ||| | |  | | | ||| |    || | |  |||| |   |   |  |  |  ||| | |||  || ||  | ||  |||    |||    
TATGGTTGTCATGGTGTAGGAATGAGGAATATAATGCGACAGATAGGACTAGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaacagttgctccaatttttatgctatatcttgctgcaaaattgtgatttcttaggagcctgctttatgtttgtaatgttctatacttgatcaggtgagatcataag

upper sequence: Vv15s0021g02090.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os04g46390.1 (Oryza sativa), 5'ss of exon 5
TATGGCTGCCAAGGTTCAGGAATGAAGATTACAACCCGACAGATTGCACCAGGCATGATTCAACAAATGCAACATGTCTGTCATGAATGCAGAGGGTCAGgtaattaactgaaacctatttttgtttcatgttttttgtttttcaaattttttttccttaattttttcaaaattttttatgcctgta-tcttatttggttgattcag
||||| || || |||  |||||||| || || ||  |||||||| | || ||||||||||||||| |||||   |||||||| |||||||||||| |||||||   ||| |   |     ||| | |  | | | ||| |    ||||| |  || ||||        |   |  ||||||  |||| | || | |  ||||| |||
TATGGTTGTCATGGTGTAGGAATGAGGAATATAATGCGACAGATAGGACTAGGCATGATTCAACATATGCAGACTGTCTGTCCTGAATGCAGAGGATCAGgtatgcaacagttgctccaatttttatgctatatcttgctgca-aaattgtgatttcttagg------agcctgctttatgtttgtaatgttctatacttgat-cag

upper sequence: Vv15s0021g02090.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G14540.2 (Glycine max), 5'ss of exon 5
TATGGCTGCCAAGGTTCAGGAATGAAGATTACAACCCGACAGATTGCACCAGGCATGATTCAACAAATGCAACATGTCTGTCATGAATGCAGAGGGTCAGgtaattaactgaaacctatttttgtttcatgttttttgtttttcaaattttttttccttaattttttcaaaattttttatgcctgtatcttatttggttgattcag
| ||| ||||||||  | || ||||| |||||||   | ||||||| || |||||||||||||||||||||||||||||||| ||| |||||||| || ||||||     | || || | |||     || || |||| ||     ||  | ||||||  |  |       |  ||| ||   || |                   
TTTGGATGCCAAGGCACTGGTATGAAAATTACAAGAAGGCAGATTGGACTAGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaat-----ggaagctttattttccatattttgtttggttgctttatgatgtttcctccagctc------acctttcattgatgcag------------------

upper sequence: Vv15s0021g02090.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G27030.1 (Glycine max), 5'ss of exon 5
TATGGCTGCCAAGGTTCAGGAATGAAGATTACAACCCGACAGATTGCACCAGGCATGATTCAACAAATGCAACATGTCTGTCATGAATGCAGAGGGTCAGgtaattaactgaaacctatttttgtttcatgttttttgtttttcaaattttttttccttaattttttcaaaattttttatgcctgtatcttatttggttgattcag
| ||| ||| ||||  | || ||||| |||||||   | ||||||| || |||||||||||||||||||||||||||||||| ||| |||||||| || ||||||     | || || | |||     || || |||| ||     ||  | ||||||  |  |       |  ||| ||   || |                   
TTTGGATGCAAAGGCACTGGTATGAAAATTACAAGAAGGCAGATTGGACTAGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaat-----ggaaactttattttccatattttgtttggttgctttatgatgtttcctccagctc------acctttcattgatgcag------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110716623|gb|EE091767.1|EE091767
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCATGAATGCAGAGGGTCAG                         GTGAGGTTATTAGTGAGAGAGATAGGTGCCCCCAGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCATGAATGCAGAGGGTCAGgtaattaact ... gttgattcagGTGAGGTTATTAGTGAGAGAGATAGGTGCCCCCAGTGCAAAGGAAACAAGG
EST: gi|71857103|gb|DT006158.1|DT006158
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCATGAATGCAGAGGGTCAG                         GTGAGGTTATTAGTGAGAGAGATAGGTGCCCCCAGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCATGAATGCAGAGGGTCAGgtaattaact ... gttgattcagGTGAGGTTATTAGTGAGAGAGATAGGTGCCCCCAGTGCAAAGGAAACAAGG
EST: gi|71858916|gb|DT007971.1|DT007971
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCATGAATGCAGAGGGTCAG                         GTGAGGTTATTAGTGAGAGAGATAGGTGCCCCCAGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCATGAATGCAGAGGGTCAGgtaattaact ... gttgattcagGTGAGGTTATTAGTGAGAGAGATAGGTGCCCCCAGTGCAAAGGAAACAAGG
EST: gi|294966835|gb|GW839710.1|GW839710
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCATGAATGCAGAGGGTCAG                         GTGAGGTTATTAGTGAGAGAGATAGGTGCCCCCAGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCATGAATGCAGAGGGTCAGgtaattaact ... gttgattcagGTGAGGTTATTAGTGAGAGAGATAGGTGCCCCCAGTGCAAAGGAAACAAGG
EST: gi|29782022|gb|CB346980.2|CB346980
EST:     AGGCATGATTCAACAAATGCAACATGTCTGTCATGAATGCAGAGGGTCAG                         GTGAGGTTATTAGTGAGAGAGATAGGTGCCCCCAGTGCAAAGGAAACAAGG
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCATGAATGCAGAGGGTCAGgtaattaact ... gttgattcagGTGAGGTTATTAGTGAGAGAGATAGGTGCCCCCAGTGCAAAGGAAACAAGG