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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAACCCACCCAGACAAGTGATTTCCATCAGCCCGATATACAATCCTAACACAAATCGAACAAGTCAACAATACTTGGATCCAGCTTCAGgttattcaatgtttttctgttcaaaataactgtcttttccaactgccacattttgcaactgtatgaatcttaatattttgtcttataaccacatcatctttaggacaaccaatcttgcag

Basic information

species Vitis vinifera
transcript Vv15s0021g01940.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g01940.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G48080.1 (Glycine max), 5'ss of exon 5
-GGAAAACCCACCCAGACAAGTGATTTCCATCAGCCCGATATACAATCCTAACACAAATCGAACAAGTCAACAATACTTGGATCCAGCTTCAGgttattcaatgtttttctgttcaaaataactgtcttttccaactgccacattttgcaactgtatgaatcttaatattttgtcttataaccacatcatctttaggacaaccaatcttgcag
 |||||||||||| |||||||||||||| || ||||| | ||||||   |    ||| |||| ||   || | |||  | || ||| |||||||||||| ||||||||      || || |         |  | ||||||  |||  ||  | ||| ||  |||  || |||||||| || ||| |||||| ||||||||||||||||||| 
GGGAAAACCCACCAAGACAAGTGATTTCAATTAGCCCAACATACAACTATGCTGCAATTCGACCATCCCAGCCATATCTTGACCCAACTTCAggttatttaatgttttctataacagaaca---------tttagctgcca--tttaacagttatatcaagtttagaatattgtcttacaatcacttcatctctaggacaaccaatcttgca-

upper sequence: Vv15s0021g01940.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G48080.1 (Glycine max), 5'ss of exon 5
-GGAAAACCCACCCAGACAAGTGATTTCCATCAGCCCGATATACAATCCTAACACAAATCGAACAAGTCAACAATACTTGGATCCAGCTTCAGgttattcaatgtttttctgttcaaaataactgtcttttccaactgccacattttgcaactgtatgaatcttaatattttgtcttataaccacatcatctttaggacaaccaatcttgcag
 |||||||||||| |||||||||||||| || ||||| | ||||||   |    ||| |||| ||   || | |||  | || ||| |||||||||||| ||||||||      || || |         |  | ||||||  |||  ||  | ||| ||  |||  || |||||||| || ||| |||||| ||||||||||||||||||| 
GGGAAAACCCACCAAGACAAGTGATTTCAATTAGCCCAACATACAACTATGCTGCAATTCGACCATCCCAGCCATATCTTGACCCAACTTCAggttatttaatgttttctataacagaaca---------tttagctgcca--tttaacagttatatcaagtttagaatattgtcttacaatcacttcatctctaggacaaccaatcttgca-