Sequence
atgc intronic sequence ATGC exonic sequenceGGCTGATGACAAATGTAGCATGGAGGTTGCACTAGCAGGTGGTGTACATGCTTTGGTTATGCTTGCTCGGAACTGCAAGTTTGAAGGAGTGCAAGAGCAGgtagtactgcacttgttttgaatattagaagggagtgccttggtttacaccaatatctatagcactctatttcttgcaaacatgtcttgcaactaaaaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g01810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os10g41360.1 (Oryza sativa), 5'ss of exon 4
GGCTGATGACAAATGTAGCATGGAGGTTGCACTAGCAGGTGGTGTACATGCTTTGGTTATGCTTGCTCGGAACTGCAAGTTTGAAGGAGTGCAAGAGCAGgtagtactgcacttgttttgaatattagaagggagtgccttggtttacaccaa-tatctatagcactctatttcttgcaaacat--gtcttgcaactaaaaat
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TGCTGATGACAAGTGTAGCATGGAAGTTGCAAAGGCTGGTGGTGTCCATGCTTTGGTCATGCTTGCTCGATCATGTAAACTTGAGGGTGTCCTAGAACAGgtgagcgggtacatcatgt---cgtcatgcttgtacgcattcgttctagtcagctagttataccatagctttttttgctagctctgataatacaactaacggt
upper sequence: Vv15s0021g01810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G079031_T03 (Zea mays), 5'ss of exon 4
GGCTGATGACAAATGTAGCATGGAGGTTGCACTAGCAGGTGGTGTACATGCTTTGGTTATGCTTGCTCGGAACTGCAAGTTTGAAGGAGTGCAAGAGCAGgtagtactgcacttgttttgaatattagaagggagtgccttggtttacaccaatatctatagcactctatttcttgcaaacatgtct-tgcaactaaaaat------------
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TGCTGATGACAAGTGTAGCTTGGAAGTTGCAAAGGCTGGTGGTGTCCATGCTTTGGTTACACTTGCTAGATCATGTAAACTTGATGGTGTCCTAGAACAGgtaa-acatcacatg----gcaccttca-------tgcttttttttccctgtaaacaaccagtattc-atttatcataggtgttttggtactgctagtgatatgagttccatg
upper sequence: Vv15s0021g01810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G37720.1 (Glycine max), 5'ss of exon 5
GGCTGATGACAAATGTAGCATGGAGGTTGCACTAGCAGGTGGTGTACATGCTTTGGTTATGCTTGCTCGGAACTGCAAGTTTGAAGGAGTGCAAGAGCAGgtagtactgcacttgttttgaatattagaagggagtgccttggtttac-accaatatctatagcactctatt-tcttgcaaac-atgtcttgcaactaaaaat----
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AGCTGATGACAAGTGTAGTACAGAGGTTGCACTAGCAGGAGGTGTACATGCTCTAGTGATGCTTGCTCGTAACTGCAAATTTGAGGGAGTGCAAGAGCAGgtagcattac-----tttttattatttg--ggtaccatccagttcagttgctaaaatctttgaagctgttttatttggtagatgatacctgccaattgaatgttgga
upper sequence: Vv15s0021g01810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G48840.1 (Glycine max), 5'ss of exon 4
GGCTGATGACAAATGTAGCATGGAGGTTGCACTAGCAGGTGGTGTACATGCTTTGGTTATGCTTGCTCGGAACTGCAAGTTTGAAGGAGTGCAAGAGCAGgtagtactgcacttgttttgaatattagaagggagtgccttggttta--caccaatatctatagcactctatttcttg-caaacatgtcttgc-aactaaaaat----
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AGCTGATGACAAGTGTAGTACAGAGGTTGCAACGGCAGGAGGTGTACATGCTCTAGTGATGCTTGCTCGTAACTGCAAATTTGAGGGAGTGCAAGAGCAGgtagcacttcattt--------tattatttgggtaccatccagttcagttgctaaaatctttgaagctgttttattaggtagataatacttgccaattgaatattggaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34545402|gb|CF513634.1|CF513634EST: CTTTGGTTATGCTTGCTCGGAACTGCAAGTTTGAAGGAGTGCAAGAGCAG GCTGCACGTGCCTTGGCTAATTTGGCTGCTCATGGAGATAACAACAGCAAC
genomic: CTTTGGTTATGCTTGCTCGGAACTGCAAGTTTGAAGGAGTGCAAGAGCAGgtagtactgc ... tacataccagGCTGCACGTGCCTTGGCTAATTTGGCTGCTCATGGAGATAGCAACAGCAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCTGATGACAAATGTAGCATGGAGGTTGCACTAGCAGGTGGTGTACATGCTTTGGTTATGCTTGCTCGGAACTGCAAGTTTGAAGGAGTGCAAGAGCAGgtagtactgcacttgttttgaatattagaagggagtgccttggtttacaccaatatctatagcactctatttcttgcaaacatgtcttgcaactaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaaaaa