Sequence
atgc intronic sequence ATGC exonic sequenceGGACCATCGCCCTCAATCAGGTGTATGGAAAGGAACAAATGGTGGAGAAGTCATTTCCTTTAGTGGTTGTGATGATGATCAAACATCTGCTGATACATCTgtaagtttcggaatgactgattagacatagtccttatatatcttattttcccaattgtttcaagacctcagaccaaaaagctaaatatgtgtatactgatttctttgggaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g00990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G035928_T01 (Zea mays), 5'ss of exon 3
GGACCATCGCCCTCAATCAGGTGTATGGAAAGGAACAAATGGTGGAGAAGTCATTTCCTTTAGTGGTTGTGATGATGATCAAACATCTGCTGATACATCTgtaagtttcggaatgactgattagacatagtccttatatatcttattttcccaattgtttcaagacctcagaccaaaaagctaaatatgtgtatactgatttctttgggaacag
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AGATCACCGACCGCGATCTGGTGTCTGGAAAGGCACTAGTGGTGGGGAAGCTATTTCCTTTAGTGGTTGTGATGATGATCAGACCTCTGCAGATACCTCTgtaagttctagatccactcctcaacaat--ttattgca-gtcatgtct----atgtgctact---ctttaaattatgaggc-gagtctgttta-agggactgctggcagatc--
upper sequence: Vv15s0021g00990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G155422_T01 (Zea mays), 5'ss of exon 3
GGACCATCGCCCTCAATCAGGTGTATGGAAAGGAACAAATGGTGGAGAAGTCATTTCCTTTAGTGGTTGTGATGATGATCAAACATCTGCTGATACATCTgtaagtttcggaatgactgattagacatagtccttatatatct-tattttcccaattgtttcaagacctcagaccaaaaagctaaatatgtgtatactgatttctttgggaacag
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AGATCACCGACCACCATCTGGTGTCTGGAAAGGCACTAGTGGTGGGGAGGCTATTTCATTTAGTGGTTGTGATGATGATCAGACCTCTGCAGATACCTCTgtaagttctagatccactctaca-atttactgcagcagtatctatgttctattctttaaattatgaggtgagtctgtttaggggactgctggcagatcatc--------------
upper sequence: Vv15s0021g00990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G45470.1 (Glycine max), 5'ss of exon 3
GGACCATCGCCCTCAATCAGGTGTATGGAAAGGAACAAATGGTGGAGAAGTCATTTCCTTTAGTGGTTGTGATGATGATCAAACATCTGCTGATACATCTgtaagtttcggaatgactgattagacatagtccttatatatcttattttcccaattgtttcaagacctcagaccaaaaagctaaatatgtgtatactgatttctttgggaacag
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GGACCATCGCCCTAGATCCGGTGTATGGAAGGGATCTAGTGGTGGAGAAGTTATCTGCTTCAGTGGATGCGACGATCATCAAACTTCAGCTGATACATCTgtaagtttcagcaatttcaaattgatttgtctcttgactgtttcaatct----agacctgtgagatcttttttc-------tgaacatatgatcatt-atccctcta--aacag
upper sequence: Vv15s0021g00990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA01G10880.2 (Glycine max), 5'ss of exon 3
GGACCATCGCCCTCAATCAGGTGTATGGAAAGGAACAAATGGTGGAGAAGTCATTTCCTTTAGTGGTTGTGATGATGATCAAACATCTGCTGATACATCTgtaagtttcggaatgactgattagacatagtccttatatatcttattttcccaattgtt-tcaagacctcagaccaaaaagctaaatatgtgtatactgatttctttgggaacag
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GGACCATCGCCCTAGATCTGGTGTATGGAAGGGATCTAGTGGTGGAGACATTATCTGCTTCAGTGGATGCGATGATCATCAAACTTCAGCTGATACATCTgtaagtttcagcaaattcaaattgatttgtctcttgactgtcttttgtctgaacatatgatcattatccctg--taaacag----------------------------------
upper sequence: Vv15s0021g00990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G02170.1 (Arabidopsis thaliana), 5'ss of exon 3
GGACCATCGCCCTCAATCAGGTGTATGGAAAGGAACAAATGGTGGAGAAGTCATTTCCTTTAGTGGTTGTGATGATGATCAAACATCTGCTGATACATCTgtaagtttcggaatgact--gattagacatagtccttatatatcttattttcccaattgtttcaagacctcagaccaaaaagctaaatatgtgtatactgatttctttgggaacag
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GGATCATCGGCCTAGGTCAGGTTTGTGGAAAGGAACTGCTGGTGGAGAAGCCATTTCAATTAGTGGATGTGATGATGATCAGACTTCGGCCGACACATCAgtaagt---agaacgactctaatcatacgtcttgctgttgtagttggttcctcctctcatgattaaaacacatacacag-------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110358495|gb|EC922751.1|EC922751EST: TCATTTCCTTTAGTGGTTGTGATGATGATCAAACATCTGCTGATACATCT GCATTATCACAAATTACATCAACTGGTGCTATGACTTTCTGTTTCATCCAA
genomic: TCATTTCCTTTAGTGGTTGTGATGATGATCAAACATCTGCTGATACATCTgtaagtttcg ... ttgggaacagGCATTATCACAAATTACATCAACTGGTGCTATGACTTTCTGTTTCATCCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGACCATCGCCCTCAATCAGGTGTATGGAAAGGAACAAATGGTGGAGAAGTCATTTCCTTTAGTGGTTGTGATGATGATCAAACATCTGCTGATACATCTgtaagtttcggaatgactgattagacatagtccttatatatcttattttcccaattgtttcaagacctcagaccaaaaagctaaatatgtgtatactgatttctttgggaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT