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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAGgtcagaattgcctcctccactttgacttgttaaatgctgttttaaggaaattttgttagttctttattaattgactttccggtagatggataataaacat...

Basic information

species Vitis vinifera
transcript Vv14s0219g00120.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110723575|gb|EE101045.1|EE101045
EST:     CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG                         GCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
genomic: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAGgtcagaattg ... taaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
EST: gi|351045861|gb|FQ441046.1|FQ441046
EST:     CACAATACAAGTTGTTATGACAGTCATCAAATATGTTCCGCAG                         GCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
genomic: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAGgtcagaattg ... taaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
EST: gi|351030795|gb|FQ438633.1|FQ438633
EST:     CACAATACAAGTTGTTATGACAGTCATCAAATATGTTCCGCAG                         GCATTTATGAACTTCCGGCGGAAGAGCACAAATGGATTTAGC
genomic: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAGgtcagaattg ... taaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGC
EST: gi|110699274|gb|EE076127.1|EE076127
EST:     CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG                         GCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
genomic: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAGgtcagaattg ... taaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
EST: gi|294966259|gb|GW837510.1|GW837510
EST:     CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG                         GCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
genomic: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAGgtcagaattg ... taaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
EST: gi|349820300|gb|FQ403916.1|FQ403916
EST:     CACAATACAAGTTGTTATGACAGTCATCAAATATGTTCCGCAG                         GCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
genomic: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAGgtcagaattg ... taaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
EST: gi|349809992|gb|FQ398617.1|FQ398617
EST:     CACAATACAAGTTGTTATGACAGTCATCAAATATGTTCCGCCG                         GCCTTTATGAACTTCCCGCCGAAGAGCACAGATGGAATTAG
genomic: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAGgtcagaattg ... taaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAG
EST: gi|110696243|gb|EE075180.1|EE075180
EST:     CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCACAG                         GCATTTATGAACTTCCGGCGGAAGAGCACTGATGGATTTAGCATTGGCAAC
genomic: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAGgtcagaattg ... taaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
EST: gi|110724366|gb|EE100141.1|EE100141
EST:     CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG                         GCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
genomic: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAGgtcagaattg ... taaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
EST: gi|34549515|gb|CF517747.1|CF517747
EST:     CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG                         GCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
genomic: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAGgtcagaattg ... taaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAGgtcagaattgcctcctccactttgacttgttaaatgctgttttaaggaaattttgttagttctttattaattgactttccggtagatggataataaacat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaca