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TCTCAAGAAGGATCATCACGGAGACTCTTTTATCTTGCACTTCCTCCATCAGTATATCCGTCTGTCTGCAGGATGATCAAGCTTTGTTGCATGAATAAATgtaagtttcctttaccagattggttctgtgagtcagtatctatgcattcaggcttaagtatgatttggttatttatcttgtcaaggtgcactttcaattt...
species | Vitis vinifera |
transcript | Vv14s0171g00490.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGTATATCCGTCTGTCTGCAGGATGATCAAGCTTTGTTGCATGAATAAAT CTAATCTTGGTGGATGGACACGCATTGTGGTTGAGAAGCCTTTCGGNCA-GEST: gi|30299156|gb|CB975950.1|CB975950
genomic: AGTATATCCGTCTGTCTGCAGGATGATCAAGCTTTGTTGCATGAATAAATgtaagtttcc ... tcttttccagCTAATCTTGGTGGATGGACACGCATTGTGGTTGAGAAGCCTTTCGG-CAAG
EST: AGTATATCCGTCTGTCTGCAGGATGATCAAGCTTTGTTGCATGAATAAAT CTAATCTTGGTGGATGGACACGCATTGTGGTTGAGAAGCCTTTTGGCAAGGEST: gi|110686452|gb|EE064108.1|EE064108
genomic: AGTATATCCGTCTGTCTGCAGGATGATCAAGCTTTGTTGCATGAATAAATgtaagtttcc ... tcttttccagCTAATCTTGGTGGATGGACACGCATTGTGGTTGAGAAGCCTTTCGGCAAGG
EST: AATATATCCGTCTGTCTGCAGGATGATCAAGCTTTGTTGCATGAATAAAT CTAATCTTGGTGGATGGACACGCATTGTGGTTGAGAAGCCTTTCGGCAAGGEST: gi|161717585|gb|FC065623.1|FC065623
genomic: AGTATATCCGTCTGTCTGCAGGATGATCAAGCTTTGTTGCATGAATAAATgtaagtttcc ... tcttttccagCTAATCTTGGTGGATGGACACGCATTGTGGTTGAGAAGCCTTTCGGCAAGG
EST: AGTATATCCGTCTGTCTGCAGGATGATCAAGCTTTGTTGCATGAATAAAT CTAATCTTGGTGGATGGACACGCATTGTGGTTGAGAAGCCTTTTGGCAAGGEST: gi|110364929|gb|EC928538.1|EC928538
genomic: AGTATATCCGTCTGTCTGCAGGATGATCAAGCTTTGTTGCATGAATAAATgtaagtttcc ... tcttttccagCTAATCTTGGTGGATGGACACGCATTGTGGTTGAGAAGCCTTTCGGCAAGG
EST: AGTATATCCGTCTGTCTGCAGGATGATCAAGCTTTGTTGCATGAATAAAT CTAATCTTGGTGGATGGACACGCATTGTGGTTGAGAAGCCTTTTGGCAAGGEST: gi|30128024|gb|CB913363.1|CB913363
genomic: AGTATATCCGTCTGTCTGCAGGATGATCAAGCTTTGTTGCATGAATAAATgtaagtttcc ... tcttttccagCTAATCTTGGTGGATGGACACGCATTGTGGTTGAGAAGCCTTTCGGCAAGG
EST: AGTATATCCGTCTGTCTGCAGGATGATCAAGCTTTGTTGCATGAATAAAT CTAATCTTGGTGGATGGACACGCATTGTGGTTGAGAAGCCTTTCGGCAAGGEST: gi|161719304|gb|FC068268.1|FC068268
genomic: AGTATATCCGTCTGTCTGCAGGATGATCAAGCTTTGTTGCATGAATAAATgtaagtttcc ... tcttttccagCTAATCTTGGTGGATGGACACGCATTGTGGTTGAGAAGCCTTTCGGCAAGG
EST: AGTATATCCGTCTGTCTGCAGGATGATCAAGCTTTGTTGCATGAATAAAT CTAATCTTGGTGGATGGACACGCATTGTGGTTGAGAAGCCTTTTGGCAAGGEST: gi|110372969|gb|EC937167.1|EC937167
genomic: AGTATATCCGTCTGTCTGCAGGATGATCAAGCTTTGTTGCATGAATAAATgtaagtttcc ... tcttttccagCTAATCTTGGTGGATGGACACGCATTGTGGTTGAGAAGCCTTTCGGCAAGG
EST: AGTATATCCGTCTGTCTGCAGGATGATCAAGCTTTGTTGCATGAATAAAT CTAATCTTGGTGGATGGACACGCATTGTGGTTGAGAAGCCTTTTGGCAAGG
genomic: AGTATATCCGTCTGTCTGCAGGATGATCAAGCTTTGTTGCATGAATAAATgtaagtttcc ... tcttttccagCTAATCTTGGTGGATGGACACGCATTGTGGTTGAGAAGCCTTTCGGCAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCAAGAAGGATCATCACGGAGACTCTTTTATCTTGCACTTCCTCCATCAGTATATCCGTCTGTCTGCAGGATGATCAAGCTTTGTTGCATGAATAAATgtaagtttcctttaccagattggttctgtgagtcagtatctatgcattcaggcttaagtatgatttggttatttatcttgtcaaggtgcactttcaattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT