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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCGCCACAATGGTCAAAACTATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattcttcttcactgatgatattagttttcatggttaattttgtgacacagacttcataattttcttataaactttaacatcacgactttgtatttt...

Basic information

species Vitis vinifera
transcript Vv14s0171g00330.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0171g00330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g70960.1 (Oryza sativa), 5'ss of exon 5
GCTCGCCACAATGGTCAAAACTATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattcttctt-cactgatgatattagt-tttcatggttaattttgtgacacagacttcataatt--ttcttataaactttaacatcacgactttgtatttt
||  | |||||||| || |||||||| ||||| || || |||||||| |||||||||||||||||  |||||||||     |||   ||  ||  | ||  | ||| |  |||  |          ||  |||| |  |  ||||   |   | | |  |      ||||||    
GCCAGGCACAATGGCCAGAACTATGTTTTTGCTCTTCTCACTGGTTATCGTGATCCACCTGCTGGTGTTTCGgtaaccctctctcatacatattgttttgttattttagtgttggtcgctacttgtaggtttcacatatgattctctgagtatctgatttgttagatttgta----

upper sequence: Vv14s0171g00330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os05g23620.1 (Oryza sativa), 5'ss of exon 6
GCTCGCCACAATGGTCAAAACTATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaat-----tcttcttcactgatgatattagttttcatggttaat-tttgtgacacagac--ttcataattttcttataaactttaacatcacgactttgtatttt
||  | |||||||| || |||||||| ||||| || || ||||||||||||||||||||||| ||  ||  |||||||     |||   ||| | ||    |  |  ||    |||  |  |||  |     |     | |||||   ||| ||||  |||    | |   |||      
GCAAGGCACAATGGCCAGAACTATGTGTTTGCTCTTCTTACTGGTTACCGTGATCCACCTGCCGGTGTTCAGgtaaatctcattctctgtcagttataccttaggcatttgcagttgctacttgctatgtgtatcgcccttaattcctttacaaacaataaag--atgctcttg------

upper sequence: Vv14s0171g00330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G032367_T04 (Zea mays), 5'ss of exon 4
----------------------------GCTCGCCACAATGGTCAAAACTATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattcttcttcactgatgatattagttttcatggttaattttgtgacacagacttcataattttcttataaactttaacatcacgactt-tgtatttt------------
                            ||  | ||||||||||| |||||||| || || || || ||||| ||||||||||||||||||||  ||  ||||       ||| |||  || ||||  || |     |    | |||   ||||  | | | || || |      || ||  ||      || |  ||  |            
GCTTACTGTTTGCATTGCATTCATCCAGGCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgta-------ctttacttgtg-tatttattcttgcaatctggtgtgttttacag-ttccgtgatgttttcg----ctctagtattgttgtttataaatggttaggagtacctc

upper sequence: Vv14s0171g00330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G032367_T01 (Zea mays), 5'ss of exon 5
GCTCGCCACAATGGTCAAAACTATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattcttcttcactgatgatattagttttcatggttaattttgtgacacagacttcataattttcttataaactttaacatcacgactt-tgtatttt------------
||  | ||||||||||| |||||||| || || || || ||||| ||||||||||||||||||||  ||  ||||       ||| |||  || ||||  || |     |    | |||   ||||  | | | || || |      || ||  ||      || |  ||  |            
GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgta-------ctttacttgtg-tatttattcttgcaatctggtgtgttttacag-ttccgtgatgttttcg----ctctagtattgttgtttataaatggttaggagtacctc

upper sequence: Vv14s0171g00330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G07020.1 (Glycine max), 5'ss of exon 5
GCTCGCCACAATGGTCAAAACTATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattcttcttcactgatgatattagttttcatggttaattttgtgac----acagacttcat-aattttcttataaactttaacatcacgactttgtatttt
||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||||  |||||||||||| || |  | | |   | ||| || | ||| ||| |  ||| ||     || | |  |  ||  || |  || |  | ||   |  ||||  ||     
GCTCGTCACAATGGTCAGAACTATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattgttgtctattaacatttttaattattatgcttattgctgtaacttttgcacattctaccaaagttgtcttatatgtcaattgctagactacgt-----

upper sequence: Vv14s0171g00330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G06700.2 (Glycine max), 5'ss of exon 5
GCTCGCCACAATGGTCAAAACTATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattcttcttcactgatgatattagttttcatggttaattttgtgacacagactt-cataattttctta-taaact--ttaacatcacgactttgtatttt
|| || ||||||||||| |||||||| ||||| || || |||||||| ||||| |||||||||||  ||||||||||||||||||   |    || |||  | |  |  || |||| || |   |   ||  | | ||| || | |  |||  |  | |   | |         | 
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGgtaaattcttctttctt----atcttaagtcttctactttatttagtaaagtaattttatacattttgctcagttgactgatggaaaatgctaggccaccaata

upper sequence: Vv14s0171g00330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G24620.2 (Glycine max), 5'ss of exon 5
GCTCGCCACAATGGTCAAAACTATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattcttcttca-ctgatgatattagttttcatggttaattttgtgacacagacttcat--aattttcttat--aaactttaacatcacgactttgtatttt
|| || ||||||||||| |||||||| ||||| || ||||||||||| ||||| |||||||||||  |||| |||| ||||| || | || | |   |   ||||  |   |||  |  |   | | | ||     | ||  || ||  ||| | | |   ||| | |   |     
GCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTAACTGGTTATCGTGACCCACCTGCTGGTGTTTCAgtaagttcttttttatctaaagtcttctattttatttagtaaagtaattttataaatttttctaagttgactgatggaaaatgttaggccaccaatacct-----

upper sequence: Vv14s0171g00330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G22530.2 (Glycine max), 5'ss of exon 5
GCTCGCCACAATGGTCAAAACTATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattcttcttcactgatgatattagttttcatggttaattttgtgacacagacttcataattttcttataaactttaacatcacgactttgtatttt---
||||||||||||||||| |||||||| ||| | || ||||| ||||| ||||| || ||||||||  |||||||||||| | ||  | | |   | | | |  | ||| ||| |  ||| ||      | || | | | || |     | | | ||    | ||  ||   |   
GCTCGCCACAATGGTCAGAACTATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattttgctctattaacattttaaataattatgcttattgctgtaactt---ttgcacattctactaaagttgtcttatatggaaaattgctagactacg

upper sequence: Vv14s0171g00330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G27240.1 (Arabidopsis thaliana), 5'ss of exon 5
GCTCGCCACAATGGTCAAAACTATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattcttcttcactgatgatattagttttcatggttaattttgtgacacagacttcataattttcttataaactttaacatcacgactttgtatttt
|| || |||||||||| ||||||||| ||||| || || ||||||||||||||||| ||||||||||| ||||||| ||  ||| || |    | |||    ||| | |  ||||    |     |   | | || |    |   |||| ||                    
GCACGTCACAATGGTCCAAACTATGTCTTTGCGCTTCTGACTGGTTACCGTGATCCCCCTGCTGGCATATCGgtaagtttctct-cattttccacattgaacttcttcg--aattcaaagtgctggttatgaaaaatccgatgataactgtacag-----------------

upper sequence: Vv14s0171g00330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G40810.2 (Arabidopsis thaliana), 5'ss of exon 4
GCTCGCCACAATGGTCAAAACTATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattcttcttcactgatgatattagttttcatggttaattttgtgacacagacttcataattttcttataaactttaacatcacgactttgtatttt
|| || |||||||| ||||| ||||| ||||| ||| | |||||||| |||||||| |||||||| |||||||||||||  ||| |  |  |    ||||  ||    |||| |       || |    |   || ||    |||| | |     | |||  |         
GCACGTCACAATGGCCAAAATTATGTCTTTGCTCTGTTGACTGGTTATCGTGATCCTCCTGCTGGAATTTCGgtaaatttctctcctatttttgctttagactt----gttattacaacttca-aattgttggaagttagaaataatcctgtgactaacgggtacag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110360731|gb|EC924064.1|EC924064
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|77587867|gb|DV223133.1|DV223133
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|110696692|gb|EE073029.1|EE073029
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|161720747|gb|FC069966.1|FC069966
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|349823939|gb|FQ417326.1|FQ417326
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|110381663|gb|EC935060.1|EC935060
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|110379810|gb|EC945030.1|EC945030
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|349807741|gb|FQ402132.1|FQ402132
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|110426281|gb|EC992684.1|EC992684
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|77585756|gb|DV221974.1|DV221974
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|71873090|gb|DT022145.1|DT022145
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|110693499|gb|EE069785.1|EE069785
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAAGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|349820893|gb|FQ408601.1|FQ408601
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCCAGAAGGGTTGCACTACAATCCTTACTTTCCTGGGGGGTGCAATTGC
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGG-TGCAATTGC
EST: gi|349807532|gb|FQ401947.1|FQ401947
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|110699690|gb|EE076907.1|EE076907
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|110374848|gb|EC939786.1|EC939786
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|110690901|gb|EE068387.1|EE068387
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|349811881|gb|FQ410678.1|FQ410678
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCA
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCA
EST: gi|349819860|gb|FQ404536.1|FQ404536
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         AATC-GAGAAGGGT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagA-TCCGAGAAGGGT
EST: gi|110379451|gb|EC944646.1|EC944646
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|110708536|gb|EE086193.1|EE086193
EST:     ATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|110690784|gb|EE068257.1|EE068257
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTAC
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTAC