1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTAAACGTATCTGATGTAATTATCCTGGAGGGAATTCTTGTTTTCCATGATCAACGTGTACGCAACTTGATGAACATGAAGATTTTTGTTGACACAGgtattactccttgcatctgattgttagttcaatggctattatcatttcttggtacccttttttggtttttttcatggaaattattattcttggacatttt...
species | Vitis vinifera |
transcript | Vv14s0171g00090.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGATCAACGTGTACGCAACTTGATGAACATGAAGATTTTTGTTGACACAG ATGCTGATGTGAGGCTTGCCCGTAGAATAAGGCGTGACACAGTTGAGCGGGEST: gi|110701989|gb|EE080193.1|EE080193
genomic: TGATCAACGTGTACGCAACTTGATGAACATGAAGATTTTTGTTGACACAGgtattactcc ... tggcttctagATGCTGATGTGAGGCTTGCCCGTAGAATAAGGCGTGACACAGTTGAGCGGG
EST: TGATCAACGTGTACGCAACTTGATGAACATGAAGATTTTTGTTGACACAG ATGCTGATGTGAGGCTTGCCCGTAGAATAAGGCGTGACACAGTTGAGCGGGEST: gi|46917774|gb|CN547103.1|CN547103
genomic: TGATCAACGTGTACGCAACTTGATGAACATGAAGATTTTTGTTGACACAGgtattactcc ... tggcttctagATGCTGATGTGAGGCTTGCCCGTAGAATAAGGCGTGACACAGTTGAGCGGG
EST: TGATCAACGTGTACGCAACTTGATGAACATGAAGATTTTTGTTGACACAG ATGCTGATGTGAGGCTTGCCCGTAGAATAAGGCGTGACACAGTTGAGCGGG
genomic: TGATCAACGTGTACGCAACTTGATGAACATGAAGATTTTTGTTGACACAGgtattactcc ... tggcttctagATGCTGATGTGAGGCTTGCCCGTAGAATAAGGCGTGACACAGTTGAGCGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAACGTATCTGATGTAATTATCCTGGAGGGAATTCTTGTTTTCCATGATCAACGTGTACGCAACTTGATGAACATGAAGATTTTTGTTGACACAGgtattactccttgcatctgattgttagttcaatggctattatcatttcttggtacccttttttggtttttttcatggaaattattattcttggacatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggaaa