Sequence
atgc intronic sequence ATGC exonic sequenceGAAAAGGGGATATACAGCATTGCAAACTCCATTCTTCATGAGAAAAGATATCATGGCAAAGTGTGCTCAATTAGCACAATTTGATGAAGAACTTTACAAGgtaacactaacatattattaaagagataataactaaagtgggaccatataaattttatgactatattccatataaagatatatcttatgacttacaaagt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0128g00370.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g37837.1 (Oryza sativa), 5'ss of exon 5
GAAAAGGGGATATACAGCATTGCAAACTCCATTCTTCATGAGAAAAGATATCATGGCAAAGTGTGCTCAATTAGCACAATTTGATGAAGAACTTTACAAGgtaacactaacatattattaaagagata-ataactaaagt--gggaccata--taaattttatgactatattccatataaagatatatcttatgacttacaaagt
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AAAGCGAGGCTTCAAGCCAATGCAAACTCCTTTTTTCATGAGAAAGGAAACCATGGGAAAATGTGCCCAGTTGGCCCAATTTGACGAAGAGCTTTACAAGgcaagtcaaatgaaactctggttttatacatcattggtattgagaatcgtggttgtggtttctaatgttttcatgaattaaattatgttttatatattct-----
upper sequence: Vv14s0128g00370.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os03g10190.1 (Oryza sativa), 5'ss of exon 5
GAAAAGGGGATATACAGCATTGCAAACTCCATTCTTCATGAGAAAAGATATCATGGCAAAGTGTGCTCAATTAGCACAATTTGATGAAGAACTTTACAAGgtaacactaaca------tattattaaagagataataactaaagtg-ggaccata--taaattttatgactatattccatataaagatatatcttatgacttacaaagt
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AAAGCGAGGCTTCAAGCCAATGCAAACTCCTTTTTTCATGAGAAAGGAAACCATGGGAAAATGTGCCCAGTTGGCCCAATTCGACGAAGAGCTTTACAAGgcaagacaaatgaaactctggttttatacatattacatttgtattgaggatcgtagttgtggtttttaatgttttcacgaattaaaatatgtttggtaat---------
upper sequence: Vv14s0128g00370.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G29600.1 (Glycine max), 5'ss of exon 5
GAAAAGGGGATATACAGCATTGCAAACTCCATTCTTCATGAGAAAAGATATCATGGCAAAGTGTGCTCAATTAGCACAATTTGATGAAGAACTTTACAAGgtaacactaacatattattaaagagataataactaaagtgggaccatataaattttatgactat---attccatataaagatatatcttatgacttacaaagt---
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TAAAAGGGAGTATACTTTATTGCATACTCCTTTCTTCATGAGAAAAGATATAATGTCAAAGTGTGCTCAACTAGCCCAATTTGATGAAGAACTTTATAAGgtaaaattgttagat------agattccattatctgcctgcgtttatatacaatttgtgattgttaagaccttgatgttgcttttgtctataatttacatttatat
upper sequence: Vv14s0128g00370.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G37700.1 (Glycine max), 5'ss of exon 5
GAAAAGGGGATATACAGCATTGCAAACTCCATTCTTCATGAGAAAAGATATCATGGCAAAGTGTGCTCAATTAGCACAATTTGATGAAGAACTTTACAAGgtaacactaacatattattaaagagataataactaaagtgggaccatataaattttatgactatattccatataaagatatatct-tatg-acttaca---aagt-
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AAAAAGGGAGTATACTTTATTGCATACTCCTTTCTTCATGAGAAAAGATATAATGTCAAAGTGTGCTCAACTAGCCCAATTTGATGAAGAACTTTATAAGgtaaaattgtgaagt------agattccattatctgcctgtcctcatatacaatttgcgatttttaagaccttgatgatgcttttgtatgtatttgtatttaaatt
upper sequence: Vv14s0128g00370.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G27470.1 (Arabidopsis thaliana), 5'ss of exon 5
GAAAAGGGGATATACAGCATTGCAAACTCCATTCTTCATGAGAAAAGATATCATGGCAAAGTGTGCTCAATTAGCACAATTTGATGAAGAACTTTACAAGgtaacactaacatattattaaagagataataactaaagtgggaccatataaattttatgactatattccatataaagatatatcttatgacttacaaagt
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AAAGAGAGGATTCACAGGATTGCAACCTCCTTTTTTCATGAGGAAGGATGTTATGGCCAAGTGCGCACAATTGGCACAGTTCGATGAAGAGCTTTACAAGgta---tttaattgttacaaaacatctgtgtacttgtcttg--ttagagtagttttat---------tcatagaagattgtgttttttttttgtccag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29784787|gb|CB341220.2|CB341220EST: TCATGGCAAAGTGTGCTCAATTAGCACAATTTGACGAAGAACTTTACAAG GTAACTGGTGAGGGAGATGACAAATATCTGATTGCAACAGCCGAACAACCC
genomic: TCATGGCAAAGTGTGCTCAATTAGCACAATTTGATGAAGAACTTTACAAGgtaacactaa ... tgtttaatagGTAACTGGTGAGGGAGATGACAAATATTTGATTGCAACAGCCGAACAACCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAAAGGGGATATACAGCATTGCAAACTCCATTCTTCATGAGAAAAGATATCATGGCAAAGTGTGCTCAATTAGCACAATTTGATGAAGAACTTTACAAGgtaacactaacatattattaaagagataataactaaagtgggaccatataaattttatgactatattccatataaagatatatcttatgacttacaaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagata