Sequence
atgc intronic sequence ATGC exonic sequenceATTGTGGTTTCTTTTGAGTGTGAGACACTGAAAGCTGATAAAGCAGCCGAAGACCATATTAGACAGTTCATGCCAAAATTAGCAGGGCTAGATGCTGTTGgtaagttactctgtgcctgtcattcccccatttataacttacaagaagctgccacagttgatcaagcaagaacttggggtcccagctttataccttacat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0108g01480.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G03430.1 (Glycine max), 5'ss of exon 5
ATTGTGGTTTCTTTTGAGTGTGAGACACTGAAAGCTGATAAAGCAGCCGAAGACCATATTAGACAGTTCATGCCAAAATTAGCAGGGCTAGATGCTGTTGgtaagttactct-gtgcctgtcattcccccatttataactt-acaagaagctgccacagttgatcaagcaagaacttggggtcccagctttataccttacat-
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ATCTCAGTTTCATTTGAGTGTGAGACACTTAAAGCTGAGAAAGCAGCTGAAGACCATATCAGGAAGTTCATGCCAAAATTAGCCGGACTGGATGCTGTTGgtaagtgaatgtcatgcaatttacttcccactttctacctccatgggtaact-ccgctttgctttcattttgatggaaaagtttcg--ttagtgctatgctgg
upper sequence: Vv14s0108g01480.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G05910.1 (Glycine max), 5'ss of exon 5
ATTGTGGTTTCTTTTGAGTGTGAGACACTGAAAGCTGATAAAGCAGCCGAAGACCATATTAGACAGTTCATGCCAAAATTAGCAGGGCTAGATGCTGTTGgtaagttactctg-tgcctgtcattcccccatttataactt-acaagaagctgccacagttgatcaagcaagaacttggggtcccagctttataccttacat
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ATCTCAGTTTCATTCGAGTGTGAGACACTGAAAGCTGGGAAAGCAGCTGAAGACCACATCAGGAAGTTCATGCCAAAATTAGCCGGGCTGGATGCTGTTGgtaagtgaatgtaacgcaatttacatcccactttctacctccatgggtaaccattatatctg--catttcttaatcatatatctgaagaatttcttttgatt
upper sequence: Vv14s0108g01480.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G29280.1 (Arabidopsis thaliana), 5'ss of exon 5
ATTGTGGTTTCTTTTGAGTGTGAGACACTGAAAGCTGATAAAGCAGCCGAAGACCATATTAGACAGTTCATGCCAAAATTAGCAGGGCTAGATGCTGTTGgtaagttactctgt--gcctgtcattcccccatttataacttacaag-aagctgccacagttgatcaag-caagaacttggggtcccagctttataccttacat
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GTATCGGTTTCGTTCGAGTGTGAGACATTGAAGGCAGATGAAGCAGCAGAGGACCATATCAGACAGTTTATGCCCAAATTAGCTGGACTTGATGCTGTTAgtaagtaaaaccaacactttattcttgtgccattctca--ttacatttatgttgtcttgttttgttgaatcaacacaccggggtttttgccag-----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30295728|gb|CB972522.1|CB972522EST: AGACCATATTAGACAGTTCATGCCAAAATTAGCAGGGCTAGATGCTGTTG TTAACATTGGGCGGATGAGCATCACAGGATTGGACTTGGAAGCAGCGGAGA
genomic: AGACCATATTAGACAGTTCATGCCAAAATTAGCAGGGCTAGATGCTGTTGgtaagttact ... attcgtgtagTTAACATTGGGCGGATGAGCATCACAGGATTGGACTTGGAAGCAGCGGAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGTGGTTTCTTTTGAGTGTGAGACACTGAAAGCTGATAAAGCAGCCGAAGACCATATTAGACAGTTCATGCCAAAATTAGCAGGGCTAGATGCTGTTGgtaagttactctgtgcctgtcattcccccatttataacttacaagaagctgccacagttgatcaagcaagaacttggggtcccagctttataccttacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaagaa