Sequence
atgc intronic sequence ATGC exonic sequenceGGAGGACTCTCTCAGAAAGAAGTGGAAAAAGATTGAAGAATTTGATGCCCGCAGATCTGAACTTGAAGCCATATATAGTGCTTTACTCAAATCTAACATGgtaaggtagcttggcttcatgaaattacagatcagtcagtggtatttatcagataattgtggcaatcatgatatcaataggtgatttcatcaagcatcta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0083g00990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G50960.1 (Glycine max), 5'ss of exon 5
-GGAGGACTCTCTCAGAAAGAAGTGGAAAAAGATTGAAGAATTTGATGCCCGCAGATCTGAACTTGAAGCCATATATAGTGCTTTACTCAAATCTAACATGgtaaggtagcttggcttcatgaaattacagatcagtcagtggtatttatcagataattgtggcaatcatgatatcaataggtgatttcat-caagcatcta
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CTGAAGATTCTCTAAAGAAAAAATGGAAAAAGATTGAAGAGTTTGATGCTCGTAGATCAGAACTTGAGACTATATATATGGCACTCCTTAAAGCAAATATggtaatgttccgttatttcagtatttcccgtattagtgaaatacaactgtggtatatttacagc--ttatccttgggaatggtgataccttgtttgaatcct
upper sequence: Vv14s0083g00990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G27740.1 (Glycine max), 5'ss of exon 5
GGAGGACTCTCTCAGAAAGAAGTGGAAAAAGATTGAAGAATTTGATGCCCGCAGATCTGAACTTGAAGCCATATATAGTGCTTTACTCAAATCTAACATGgtaaggtagcttggcttcatgaaattacagatcagtcagtggtatttatcagataattgtggc--aatcatgatatcaataggtgatttcatcaagcatcta
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TGAAGATTCTCTAAAGAAAAAATGGAAAAAGATTGAAGAGTTTGATGCTCGTAGATCAGAACTTGAGACTATATATACGGCACTCCTTAAAGCAAACATGgtaatgttctgttatttcagtatttcctgtactagtgaaatacaactgtggcatatttacagcttatccttgggaatggtaat--accttgtttgaatccta
upper sequence: Vv14s0083g00990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G38880.1 (Arabidopsis thaliana), 5'ss of exon 5
GGAGGACTCTCTCAGAAAGAAGTGGAAAAAGATTGAAGAATTTGATGCCCGCAGATCTGAACTTGAAGCCATATATAGTGCTTTACTCAAATCTAACATGgtaaggtagcttg-gcttcatgaaattacagatcagtcagtggtatttatca--gataattgtggcaatcatgatatcaataggtgatttcatcaagcatcta
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CGAAGATTCCTTGAAAAAGAAGTGGAAGAAAATTGAGGAATTTGATGCTCGCAGATCCGAACTTGAAACCATATATACAACTCTTCTCAAGGCCAACATGgtaatatcccaagtgattcattca-tta-aattgattaagtgataaataccatgagtaatactctgtatcatgaccttcct------ttttatatag------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30302746|gb|CB979540.1|CB979540EST: GCAGATCTGAACTTGAAGCCATATATAGTGCTTTACTCAAATCTAACATG GATGCTGCAGCATTCTGGGATCAGCAGCCGTTAGCTGCGAGGGAGTATGCA
genomic: GCAGATCTGAACTTGAAGCCATATATAGTGCTTTACTCAAATCTAACATGgtaaggtagc ... ctccttgtagGATGCTGCAGCATTCTGGGATCAGCAGCCATTAGCTGCGAGGGAGTATGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGGACTCTCTCAGAAAGAAGTGGAAAAAGATTGAAGAATTTGATGCCCGCAGATCTGAACTTGAAGCCATATATAGTGCTTTACTCAAATCTAACATGgtaaggtagcttggcttcatgaaattacagatcagtcagtggtatttatcagataattgtggcaatcatgatatcaataggtgatttcatcaagcatcta
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaaa