1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGTTAGGAACCTATGCAAGGCATTGGAGGAAGATGCTTTTAGGCCTGTCCTGCATCACTATGATGGACCTAAGTTCCGCCTTGAGCTTTCAGTTCCAGAGgtaaataagtgtcccaataagatttggtgtacaaatttttggggttgtaccttttctttttctttgcttatagttgaatatatatatatatatatatatacattaagcctagtgtttttattgtttgtatttattttgaactgagttttgttggtgattctgcag
species | Vitis vinifera |
transcript | Vv14s0068g02040.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGCATCACTATGATGGACCTAAGTTCCGCCTTGAGCTTTCAGTTCCAGAG ACCCTGGACTTGTTAGACCTATGTGAACAAGCAGGCCGCCAATAGAATGGCEST: gi|33405079|gb|CF210706.1|CF210706
genomic: TGCATCACTATGATGGACCTAAGTTCCGCCTTGAGCTTTCAGTTCCAGAGgtaaataagt ... gattctgcagACCCTGGACTTGTTAGACCTATGTGAACAAGCAGGCCGCCAATAGAATGGC
EST: TGCATCACTATGATGGACCTAAGTTCCGCCTTGAGCTTTCAGTTCCAGAG ACCCTGGACTTGTTAGACCTATGTGAACAAGCAGGCCGCCAATEST: gi|110687425|gb|EE064823.1|EE064823
genomic: TGCATCACTATGATGGACCTAAGTTCCGCCTTGAGCTTTCAGTTCCAGAGgtaaataagt ... gattctgcagACCCTGGACTTGTTAGACCTATGTGAACAAGCAGGCCGCCAAT
EST: TGCATCACTATGATGGACCTAAGTTCCGCCTTGAGCTTTCAGTTCCAGAG ACCCTGGACTTGTTAGACCTATGTGAACAAGCAGGCCGCCAATAAAATGGC
genomic: TGCATCACTATGATGGACCTAAGTTCCGCCTTGAGCTTTCAGTTCCAGAGgtaaataagt ... gattctgcagACCCTGGACTTGTTAGACCTATGTGAACAAGCAGGCCGCCAATAGAATGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTAGGAACCTATGCAAGGCATTGGAGGAAGATGCTTTTAGGCCTGTCCTGCATCACTATGATGGACCTAAGTTCCGCCTTGAGCTTTCAGTTCCAGAGgtaaataagtgtcccaataagatttggtgtacaaatttttggggttgtaccttttctttttctttgcttatagttgaatatatatatatatatatatatacattaagcctagtgtttttattgtttgtatttattttgaactgagttttgttggtgattctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT