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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTTCTTGCAGCCCTGGGATCAATTCAATTCGTTTCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAAgtatgttcaaatctgaagtgagcttgatttccgaactttgacactgttaatattttgatttccatgtatactgctaagtaaatttgaaatattgcttcttttcag

Basic information

species Vitis vinifera
transcript Vv14s0068g00780.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 5
TCACTTCTTGCAGCCCTGGGATCAATTCAATTCGTTTCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAAgtatgttcaaatctgaag--tgagcttgatttccgaactttgacactgttaatattttgatttccatgtatactgctaagtaaatttgaaatattgcttcttttcag
|||||||||||||| || ||||| |||||||| || ||||| ||||||||||| ||||| || |||||||| |   | || || |||||||      |||      ||   ||  |||   ||       | |   ||  ||   ||         ||  | |   | || ||   |   |||||   |||||
TCACTTCTTGCAGCTCTTGGATCGATTCAATTTGTGTCCAATATTGCATTTGCTTACTTTGTGTTGAACAAGACCATTTCAGTGAAgtatgcattgttctactttttggaatttttttataaaggaaatgagttccaaacttccaatacttggaattatagatttatgaagtttttactctgctt---ttcag

upper sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G477146_T01 (Zea mays), 5'ss of exon 5
TCACTTCTTGCAGCCCTGGGATCAATTCAATTCGTTTCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAAgtatgttcaaatctgaagtgagcttgatttccgaactttgacactgttaatattttgatttccatgtatactgctaagtaaatttgaaatattgct--tcttttcag
||||| |||||||| || ||||||||||| || |||||||||||||| ||||||||||| || |||||||| |   | || || ||||||||     |||||      |||  | ||  | ||   |      ||| | |  || || |||| |  |   | | |||  |  | || |||||  ||||| |||
TCACTGCTTGCAGCTCTTGGATCAATTCAGTTTGTTTCCAACATTGCTTTTGCCTACTTTGTGTTGAACAAGACTATTTCAGTGAAgtatgtatgtttctga------ctt--tctcgtagctggaa------taaaaatcagaattacatggaatcatgtgattaa--tgaagattttgctcctctttccag

upper sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G144254_T06 (Zea mays), 5'ss of exon 4
TCACTTCTTGCAGCCCTGGGATCAATTCAATTCGTTTCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAAgtatgttcaaatctgaagtgagcttgatttccgaactttgacactgttaatattttgatttccatgtatactgctaagtaaatttgaaatattgcttcttttcag
||||| |||||||| || |||||||| || || || ||||||||||| ||||||||||| ||||||||||| |   | || || ||||||||   | ||| |  |     || |  | | | |  || | |   ||||  |  |  |  |   ||    ||| | ||  ||    ||||    |||| |||
TCACTACTTGCAGCTCTTGGATCAATCCAGTTTGTGTCCAACATTGCTTTTGCCTACTTTGTTTTGAACAAGACTATTTCAGTGAAgtatgtatgattctcactt---tctggtagctggaat--gaaaattacaataact--acatggaatcatgtgactatg-aagcttctgctatt----ctttccag

upper sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G07510.1 (Glycine max), 5'ss of exon 5
TCACTTCTTGCAGCCCTGGGATCAATTCAATTCGTTTCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAAgtatgttcaaatctgaagtgagcttgatttccgaactttgacactgttaatattttgatttccatgtatactgctaagtaaatttgaaatattgcttcttttcag
|||||||||||||| ||||||||  |||| || || || |||||||| || || ||||| || ||||||||||||||| | |||||||||| | |||| |||| |||| ||    |   |  ||||    | || | |  |   || | |  | || | ||     |  || |   || || | |  ||||
TCACTTCTTGCAGCGCTGGGATCTGTTCAGTTTGTATCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTCAAgtatgct-aaatttgaactgagattaccgtttcatttttgtttgttttcacaactctgtt-ctagctgtaattcttgt--agcttaattgatggcatttgatcag

upper sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G26550.1 (Glycine max), 5'ss of exon 6
TCACTTCTTGCAGCCCTGGGATCAATTCAATTCGTTTCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAAgtatgttcaaatctgaagtgagcttgat-ttccgaactttgacactgttaatattttgatttccatgtatactgctaagtaaatttgaaatattgcttcttttcag
|||||||||||||| || |||||  |||| || || || |||||||| || || ||||| || ||||||||||||||| | || ||||||| | |||| |||| || | ||  | || |  | ||      | | | ||  |   ||        || | ||     |  || |   || |  | || ||||
TCACTTCTTGCAGCACTAGGATCTGTTCAGTTTGTATCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTAAAgtatgct-aaatttgaactgcgattactgtttcatatttgtttgttttcactaactctgttctagctgttaatacttgt--agcttaattgatggtcttttatcag

upper sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G26670.3 (Arabidopsis thaliana), 5'ss of exon 5
TCACTTCTTGCAGCCCTGGGATCAATTCAATTCGTTTCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAAgtatgttcaaatctgaagtgagcttgatttccgaactttgacactgttaatattttgatttccatgtatactgctaagtaaatttgaaatattgcttcttttcag
|| ||||| ||||| || ||||| |||||||| || |||||||| |||||||| ||  | || ||||||||||||||  ||||||||||||  ||||     |    |||  | |    ||| |   || |    || |  | | |  |   |   || ||||    || |  | |||  |||  |  |||
TCCCTTCTAGCAGCTCTTGGATCCATTCAATTTGTATCCAACATAGCATTTGCTTATGTTGTATTGAACAAAATGGTTACTGTCAAgtatg--caaact---acctcgctgcaatctttaacat--gcattaccgatttactaagtctc---tgctcttctaat---atctttagtatgccttggtcacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161706916|gb|FC057254.1|FC057254
EST:     TCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAA                         GGTACTGGTTGCCACAGCCTTTATTGTTCTTGGGAACATTTTTCTTGTTGC
genomic: TCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAAgtatgttcaa ... ttcttttcagGGTACTGGTTGCCACAGCCTTTATTGTTCTTGGGAACATTTTTCTTGTTGC
EST: gi|351040762|gb|FQ438306.1|FQ438306
EST:     TCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAA                         GGTACTGGTTGCCACAGCCTTTATTGTTCTTGGGAACATTTTTCTTGTTGC
genomic: TCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAAgtatgttcaa ... ttcttttcagGGTACTGGTTGCCACAGCCTTTATTGTTCTTGGGAACATTTTTCTTGTTGC
EST: gi|351046211|gb|FQ442589.1|FQ442589
EST:     TCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAA                         GGTACTGGTTGCCACAGCCTTTATTGTTCTTGGGAACATTTTTCTTGTTGC
genomic: TCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAAgtatgttcaa ... ttcttttcagGGTACTGGTTGCCACAGCCTTTATTGTTCTTGGGAACATTTTTCTTGTTGC
EST: gi|351030030|gb|FQ430772.1|FQ430772
EST:     TCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAA                         GGTACTGGTTGCCACAGCCTTTATTGTTCTTGGGAACATTTTTCTTGTTGC
genomic: TCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAAgtatgttcaa ... ttcttttcagGGTACTGGTTGCCACAGCCTTTATTGTTCTTGGGAACATTTTTCTTGTTGC
EST: gi|351043780|gb|FQ431332.1|FQ431332
EST:     TCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAA                         GGTACTGGTTGCCACAGCCTTTATTGTTCTTGGGAACATTTTTCTTGTTGC
genomic: TCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAAgtatgttcaa ... ttcttttcagGGTACTGGTTGCCACAGCCTTTATTGTTCTTGGGAACATTTTTCTTGTTGC
EST: gi|351013510|gb|FQ425541.1|FQ425541
EST:     TCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAA                         GGTACTGGTTGCCACAGCCTTTATTGTTCTTGGGAACATTTTTCTTGTTGC
genomic: TCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAAgtatgttcaa ... ttcttttcagGGTACTGGTTGCCACAGCCTTTATTGTTCTTGGGAACATTTTTCTTGTTGC
EST: gi|37184677|gb|CF604031.1|CF604031
EST:     TCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAA                         GGTACTGGTTGCCACAGCCTTTATTGTTCTTGGGAACATTTTTCTTGTTGC
genomic: TCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAAgtatgttcaa ... ttcttttcagGGTACTGGTTGCCACAGCCTTTATTGTTCTTGGGAACATTTTTCTTGTTGC
EST: gi|352765309|gb|FQ466006.1|FQ466006
EST:     TCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAA                         GGTACTGGTTGCCACAGCCTTTATTGTTCTTGGGAACATTTTTCTTGTTGC
genomic: TCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAAgtatgttcaa ... ttcttttcagGGTACTGGTTGCCACAGCCTTTATTGTTCTTGGGAACATTTTTCTTGTTGC