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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGCAGGGCATTGTTGAGCAAGTTCGTGATGGAAGTACAGTCCGAGTTTATTTGCTTCCAGAGTTTCAGTTTGTTCAGGTTTTTGTTGCCGGAATCCAGgtaagacatctgcatgttattattattattattttgggtctatttgtgaagggtattgcaatggggtttgcctattgttttggcacatatctcaatttccataattctcttgtggtaaattag

Basic information

species Vitis vinifera
transcript Vv14s0068g00720.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os02g32350.2 (Oryza sativa), 5'ss of exon 5
TATGCAGGGCATTGTTGAGCAAGTTCGTGATGGAAGTACAGTCCGAGTTTATTTGCTTCCAGAGTTTCAGTTTGTTCAGGTTTTTGTTGCCGGAATCCAGgtaagacatctgcatgttattattattattattttgggtctatttgtgaagggtattgcaatggggtttgcctattgttttggcacatatctcaatttccataattctcttgtggtaaattag
| || | | ||||||||| |||||||||||||| |||||||| || ||||| ||||| |||   || || ||||||||| | | |||||| ||| | |||||| |              || |   || |||| |   | | ||  ||       ||  || ||    ||  | ||| || | || | || |                               
TCTGGAAGCCATTGTTGAACAAGTTCGTGATGGCAGTACAGTTCGTGTTTACTTGCTCCCAAGTTTCCAATTTGTTCAGATATATGTTGCTGGAGTTCAGgtatgcttgtcatggacccttttgtctactattgtttcttttttcatgt------ttagaaagg----tgaatgttgattagacaaaaatgtag-----------------------------

upper sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G17050.4 (Glycine max), 5'ss of exon 6
TATGCAGGGCATTGTTGAGCAAGTTCGTGATGGAAGTACAGTCCGAGTTTATTTGCTTCCAGAGTTTCAGTTTGTTCAGGTTTTTGTTGCCGGAATCCAGgtaagacatctgcatgttattattattattattttgggtctatttgtgaagggtattgcaatggggtttgcctattgttttggcacatatctcaatttccataattctcttgtggtaaattag
 ||| |||   |||||||||| ||||||||||| |||||| ||||| | |||||||| || ||||||||||||||||| ||||||||||| ||||| |||||| |   ||   ||| | ||  ||||  |||||     |   ||        ||||   |   |    ||  ||||||||  |   || | ||                             
CATGGAGGCAGTTGTTGAGCAGGTTCGTGATGGCAGTACACTCCGAATCTATTTGCTCCCGGAGTTTCAGTTTGTTCAAGTTTTTGTTGCTGGAATTCAGgtatg-tgtcaa-atgctgttgctattgctatttgctaccgtctt--------tattcacacatg--cagctaattgttttacctt-taccccag----------------------------

upper sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G38010.1 (Glycine max), 5'ss of exon 6
TATGCAGGGCATTGTTGAGCAAGTTCGTGATGGAAGTACAGTCCGAGTTTATTTGCTTCCAGAGTTTCAGTTTGTTCAGGTTTTTGTTGCCGGAATCCAGgtaagacatctgcatgttattattattattattttgggtctatttgtgaagggtattgcaatggggtttgcctattgttttggcacatatctcaatttccataattctcttgtggtaaattag
 ||| |||   |||||||||| ||||||||||| |||||| ||||  | |||||||| || |||||||||||||| || ||||||||||| ||||| |||||| |    |   ||  | ||  ||||  ||||| |   | || | |    |    ||||         ||  ||||||||  |   || | ||                             
CATGGAGGCAGTTGTTGAGCAGGTTCGTGATGGCAGTACACTCCGTATCTATTTGCTCCCGGAGTTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAGgtatgtg--ccaaattctgttgctattgctattt-gctaccatctttattcgcacatgca---------gctaattgttttacctt-taccgcag----------------------------

upper sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G33320.1 (Glycine max), 5'ss of exon 6
TATGCAGGGCATTGTTGAGCAAGTTCGTGATGGAAGTACAGTCCGAGTTTATTTGCTTCCAGAGTTTCAGTTTGTTCAGGTTTTTGTTGCCGGAATCCAGgtaagacatctgcatgttattattattattattttgggtctatttgtgaagggtattgcaatggggtttgcctattgttttggcacatatctcaatttccataattctcttgtggtaaattag
 ||| | || ||||||||||| ||||| ||||| |||||  | || || |||||||| ||||||||||||||||| || ||||||||||| ||||| |||||| |  || |     | | |  | ||  |||||     || ||| | |   | ||   |||   | ||  |  ||   || |                                        
CATGGAAGGAATTGTTGAGCAGGTTCGCGATGGCAGTACCCTGCGTGTCTATTTGCTCCCAGAGTTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAGgtatg-tatatat-cataaatgctgtttctatttctaccct-tttctaa---gcatgcaaataatggttttcctttaaattag----------------------------------------

upper sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G00910.1 (Glycine max), 5'ss of exon 6
TATGCAGGGCATTGTTGAGCAAGTTCGTGATGGAAGTACAGTCCGAGTTTATTTGCTTCCAGAGTTTCAGTTTGTTCAGGTTTTTGTTGCCGGAATCCAGgtaagacatctgcatgttattattattattattttgggtctatttgtgaagggtattgcaatggggtttgcctattgttttggcacatatctcaatttccataattctcttgtggtaaattag
 ||| | || ||||||||||| | ||| ||||| |||||  | || || |||||||| ||||| ||||||||||| || ||||||||||| ||||| ||||||       |  ||| | ||  ||||  ||   |    |||    || |    ||||        ||| ||| |   || |                                         
CATGGAAGGAATTGTTGAGCAGGCTCGCGATGGCAGTACCCTACGCGTCTATTTGCTCCCAGAATTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAGgtatatatcataaatgctgttcctatttctacccttt-cctaagcatgcaaataattg--------ttttcctttaaattag-----------------------------------------

upper sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G07350.2 (Arabidopsis thaliana), 5'ss of exon 6
TATGCAGGGCATTGTTGAGCAAGTTCGTGATGGAAGTACAGTCCGAGTTTATTTGCTTCCAGAGTTTCAGTTTGTTCAGGTTTTTGTTGCCGGAATCCAGgtaagacatctgcatgttattattattattattttgggtctatttgtgaagggtattgcaatggggtttgcctattgttttggcacatatctcaatttccataattctcttgtggtaaattag
|||| | || ||||| |||||||| ||||||||||||||  | || |||||| | ||||||||||| |||||||| || || |||||||| ||| ||||||||     |||  |  |  || | | |    | |||   ||   ||  |||| ||  |        ||  |||||   ||||  ||| || |||    | ||| |||||||    |  |    
TATGGAAGGTATTGTAGAGCAAGTGCGTGATGGAAGTACTATTCGGGTTTATCTTCTTCCAGAGTTCCAGTTTGTGCAAGTATTTGTTGCGGGAGTCCAGgta-----tctaaacttgtttctcagt----tcttg---ctgcatgc-aaggttaacgtt------ttaacctatcactttgaaacacat-tcag---caatatttctctttcaatgtag---

upper sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G61780.1 (Arabidopsis thaliana), 5'ss of exon 6
TATGCAGGGCATTGTTGAGCAAGTTCGTGATGGAAGTACAGTCCGAGTTTATTTGCTTCCAGAGTTTCAGTTTGTTCAGGTTTTTGTTGCCGGAATCCAGgtaagacatctgcatgttattattattattattt--tgggtctatttgtgaagggtattgcaatggggt-ttgcctattgttttggcacatatctcaatttccataattctcttgtggtaaattag
 ||| | || |||||||||||||| |||||||| || ||  | || |||||| | ||||| || |||||||||||||| || |||||||| ||| |||||||| |  ||||   | |  || || ||| |   |   | ||  |  | | ||    || |     | ||  ||   ||| | |  | |                                      
CATGGAAGGTATTGTTGAGCAAGTCCGTGATGGCAGCACCATTCGGGTTTATCTTCTTCCGGAATTTCAGTTTGTTCAAGTATTTGTTGCTGGACTCCAGgtatgttatct-tgtttccttgtttttactgcgtgaggagttgacattttaatttcatggtgtaagagtgctggaaattttctatgtag-------------------------------------