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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGATGGTGGTTGGGATGCAGCAGATAGATTTGGCTATAAGCAACCCTCATGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTGgtgagccatctgaccacttttttattatggttgtcagaatgttgatgatgatggtgttatcaatacatttagctttcattggagttctatgagacatgga...

Basic information

species Vitis vinifera
transcript Vv14s0066g01720.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30324537|gb|CD007799.1|CD007799
EST:     TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTG                         CTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGA
genomic: TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTGgtgagccatc ... tattttgcagCTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGA
EST: gi|110414174|gb|EC980000.1|EC980000
EST:     TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTG                         CTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGA
genomic: TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTGgtgagccatc ... tattttgcagCTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGA
EST: gi|27582601|gb|CB005296.1|CB005296
EST:     TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTG                         CTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGA
genomic: TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTGgtgagccatc ... tattttgcagCTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGA
EST: gi|110376406|gb|EC941470.1|EC941470
EST:     TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTG                         CTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGA
genomic: TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTGgtgagccatc ... tattttgcagCTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGA
EST: gi|110411210|gb|EC976916.1|EC976916
EST:     TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTG                         CTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGA
genomic: TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTGgtgagccatc ... tattttgcagCTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGA
EST: gi|110405938|gb|EC971496.1|EC971496
EST:     TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTG                         CTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGA
genomic: TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTGgtgagccatc ... tattttgcagCTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGATGGTGGTTGGGATGCAGCAGATAGATTTGGCTATAAGCAACCCTCATGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTGgtgagccatctgaccacttttttattatggttgtcagaatgttgatgatgatggtgttatcaatacatttagctttcattggagttctatgagacatgga

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