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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCCCCCTCAAATCTTTCAAGTTCTACAAGACAAAAGAGGTTCCGACCGGCTTTTATGATATCAAAACCGGTTCATTGAACATCCGGACACCGTGGTGgtatggtcatatctgtaaacggccgattagtccaaatatatattgtatagtcaagattcatatgtcattacatgttaccagaagcctgatacagatgttttcattcacataactggtggtgaataaatatgaag

Basic information

species Vitis vinifera
transcript Vv14s0066g01690.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01690.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G01480.1 (Glycine max), 5'ss of exon 4
AGTGCCCCCTCAAATCTTTCAAGTTCTACAAGACAAAAGAGGTTCCGACCGGCTTTTATGATATCAAAACCGGTTCATTGAACATCCGGACACCGTGGTGgtatggtcatatctgtaaacggccgattagtccaaatatatattgtatagtcaagattcatatgtcattacatgttaccagaagcctgatacagatgttttcattcacataactggtggtgaataaatatgaag
| ||||| ||||||||||||||||||||||||||||| ||  |||| || ||||| | ||| |||||| |||| || |  |||||||| ||||| |||||||| | |  ||| | |     ||  |  | |    |||| |   | ||  | |    |     |||  || |     |||   ||||  | |  || |  | | |   |                         
AATGCCCTCTCAAATCTTTCAAGTTCTACAAGACAAAGGAAATTCCCACTGGCTTCTTTGAGATCAAATCCGGATCGTCAAACATCCGTACACCTTGGTGgtaagattttattttttttgtgcttagcaat---gatatctgcggcat--ttagtgcttg---gtcgatagagagagccaatggccttgtgct-atatggtaacttgta-------------------------

upper sequence: Vv14s0066g01690.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G01470.1 (Glycine max), 5'ss of exon 4
AGTGCCCCCTCAAATCTTTCAAGTTCTACAAGACAAAAGAGGTTCCGACCGGCTTTTATGATATCAAAACCGGTTCATTGAACATCCGGACACCGTGGTGgtatggtcatatctgtaaacggccgattagtccaaatatatattgtatagtcaagattcatatgtcattacatgttaccagaagcctgatacagatgttttcattcacataactggtggtgaataaatatgaag
| ||||| |||||||||||||| |||||||||||||| ||  |||| || ||||| | ||| || ||| |||| ||||  |||||||| ||||| |||||||| | |  |   |         | ||||   | |   |        | | |   ||| || | |||    || | |  | |  |    |||  ||                                      
AATGCCCTCTCAAATCTTTCAAATTCTACAAGACAAAGGAAATTCCCACTGGCTTCTTTGAGATTAAATCCGGATCATCAAACATCCGTACACCTTGGTGgtaagatttttaattctcttaagcaattatatctatggtggcgcacgt-gcctcaattaatctatcaaaggatataaagaaactcacactaccaataaaac---------------------------------

upper sequence: Vv14s0066g01690.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G04410.1 (Glycine max), 5'ss of exon 4
AGTGCCCCCTCAAATCTTTCAAGTTCTACAAGACAAAAGAGGTTCCGACCGGCTTTTATGATATCAAAACCGGTTCATTGAACATCCGGACACCGTGGTGgtatggtcatatctgtaaacggccg-attagtccaaatatatat-tgtata-gtcaagattcatatgtcattacatgttaccagaagcctgatacagatgttttcattcacataactggtggtgaataaatatgaag
| ||||| || | |||||||||||||||||||||||| ||  |||| || ||||| | ||| |||||| |||| || |  |||||||| ||||| |||||||| | |  ||| | || |       ||   |  | |||||||| | ||||  |   |   | || ||   | ||   || || | |    ||| |||   |                                   
AATGCCCACTAAGATCTTTCAAGTTCTACAAGACAAAGGAAATTCCCACTGGCTTCTTTGAGATCAAATCCGGATCCTCAAACATCCGCACACCTTGGTGgtaagattttatatatatatatatatatatatatatatatatatatatatatatatggccccgtacgtgcct-cagtctatcaaaggat--ataaagaaactc----------------------------------