Sequence
atgc intronic sequence ATGC exonic sequenceGATTCCGGTGAGCGGAGATGTTCGCAACAGTTGGGCTGGCGTATCAACACTGCAGGCTCTCTTCGTCAAAGAGCACAATGCAGTTTGTGATGCCCTCAAGgtgctattatataattgctaatatgccctcaaggtgtcatattataaatgagtaaattaaaactttgattttggttttgtgatgtttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G01480.1 (Glycine max), 5'ss of exon 5
GATTCCGGTGAGCGGAGATGTTCGCAACAGTTGGGCTGGCGTATCAACACTGCAGGCTCTCTTCGTCAAAGAGCACAATGCAGTTTGTGATGCCCTCAAGgtgctattatataattgctaatatgccctcaaggtgtcatattataaatgagtaaattaaaactttgattttggttttgtgatgtttcag----------
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AACAGCAATTTCAGGTGATGTCCGGAATAGTTGGGCTGGTGTTTCAACCTTGCAGGCACTTTTCACTCAAGAGCACAATGCAGTATGTGATGCTCTCAAGgtacgagttgaagcatttgaataacacaattagcttatgtttgtttggtcattttaagaagttatcccaactaggttggcaccacaccaaacccctatta
upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G01420.1 (Arabidopsis thaliana), 5'ss of exon 5
GATTCCGGTGAGCGGAGATGTTCGCAACAGTTGGGCTGGCGTATCAACACTGCAGGCTCTCTTCGTCAAAGAGCACAATGCAGTTTGTGATGCCCTCAAGgtgctattatataattgctaatatgccctcaaggtgtcatattat-aaatgagtaaattaaaactttgattttggttttgtgatgtttcag--------------------
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TTTAGCTATCTCCGGCGACATTCGTAACAGTTGGGCTGGTGTCTCCGCTTTGCAAGCTCTCTTCATCAAAGAGCACAACGCCGTATGCGACGCCCTCAAGgttttttttttt-----ttaataaattttttaa-tgt-acattacgaaattaattaa--aatattttttcttttgtacaaaactaattaagaacacttttatttaatatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161706450|gb|FC055497.1|FC055497EST: TGCAGGCTCTCTTCGTCAAAGAGCACAATGCAGTTTGTGATGCCCTCAAG ACGGAATATAGACATATGAACGATGAAGAACTGTATCATCGTGCAAGGCTG
genomic: TGCAGGCTCTCTTCGTCAAAGAGCACAATGCAGTTTGTGATGCCCTCAAGgtgctattat ... gatgtttcagAAGGAATATAGACATATGAACGATGAAGAACTGTATCATCGTGCAAGGCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATTCCGGTGAGCGGAGATGTTCGCAACAGTTGGGCTGGCGTATCAACACTGCAGGCTCTCTTCGTCAAAGAGCACAATGCAGTTTGTGATGCCCTCAAGgtgctattatataattgctaatatgccctcaaggtgtcatattataaatgagtaaattaaaactttgattttggttttgtgatgtttcag
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