Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagtttctacttttcttctccttcccttcccgtatttttgcttttctcatgcttgtaactcataaaatggccaatgggacaatattgtgcag

Basic information

species Vitis vinifera
transcript Vv14s0066g01320.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os06g29180.1 (Oryza sativa), 5'ss of exon 5
TGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagtttctacttttcttctccttcccttcccgtatttttgcttttctcatgcttgtaactcataaaatggccaatgggacaatattgtg-cag----
||| ||||  || || ||||| || ||||| || |||||||| |||||||| || || || |||||||||||||| ||||| || || ||||||||||||||  |    ||| ||  | | |||| |||    |   |    || |    |   || || | | || ||    |||  |     |||||  | |  ||     
TGTCTGGTTCCCCCAACCAGCACCAAAGGATCACCCATGGCGATACATGCCTAATCATGCCATGACCCCTCATATCTCTGGGACTACAATTGATGCACAGgt--cagcttttatatatgttttctactttaacttagg-gcattggagcataaaattctagaatctgattctgtgggtacccccacaatgctttaacaaaact

upper sequence: Vv14s0066g01320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os06g29220.1 (Oryza sativa), 5'ss of exon 6
TGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagtttctac-ttttcttctccttcccttcccgtatttttgcttttctcatgcttgtaact---cataaaatggccaatggga--caatattgtgcag
 || ||||  || |||||||| || ||||| || |||||||| |||||||| || || ||||||||||||||    ||||| || || ||||||| ||||||     || |||||  ||| || |||  ||  ||     |          ||  |    || | ||     || | |   || | |||   |||    |   |
CGTCTGGTTCCCCCAGCCAGCACCAAAGGATCACCCATGGCGATACATGCCCAATCATGCTATGACCCCTCACTGCTCTGGGACTACAATTGATGGACAGgtc----agcttctatgtttcctactctctctatttaaaaaaaaacttaaatcctaaaaatgaatctgtatctagatttatcatttggatttaattccttttgg

upper sequence: Vv14s0066g01320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G170602_T01 (Zea mays), 5'ss of exon 5
TGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagtttctacttttc-ttctccttcccttcccgtatttttgcttttctcatgcttgtaactca-------taaaatggccaatgggacaatattgtgcag
||| ||| | || ||||| || ||||||||||| || ||||| |||||||| ||| | || ||||||||||| || || ||||||||||||||||  |||||         ||    | || ||||   |   |    ||               | |  | | || ||       |||    |   |||| |     | ||||||
TGTGTGGCACCCTCAGCCTGCGCCCAAGGACCACCCGTGGCGCTACATGCCCAACAACGCCATGACCCCTCACATCTCCGGCACCACCATTGATGGCCAGgtcagtggacatcagggtatcattcttagtagttagtagtgcagggctgaggacgacgactatgacgcagatgtactaagcatgtttatggcatgggttggtgcag

upper sequence: Vv14s0066g01320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G049811_T01 (Zea mays), 5'ss of exon 5
TGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagtttctacttttcttctccttcccttcccgtatttttgcttttctcatgcttgtaactcataaaatggcca----atgggacaatattgtgcag--
||| ||||  ||||||||||| || ||||| || || ||||| |||||||| ||||| || ||||||||||| || ||||| || || |||||||| |||||   || |||   | |||| ||  |      |     | | | |  || |   |  ||  ||   ||  |  |  |      |||    |  |     ||   
TGTGTGGTTCCCACAGCCAGCACCAAAGGATCACCCCTGGCGCTACATGCCTAACCATGCCATGACCCCTCACATCTCTGGGACTACAATTGATGCGCAGgt---caggttctgagttttgttacctgagtttgaaaatctatctaattctaatac-ctcataggacactaggtctctgcttcatgcattagcagaactcaata

upper sequence: Vv14s0066g01320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G147714_T01 (Zea mays), 5'ss of exon 6
TGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagtttctacttttcttctccttcccttcccgtatttttgcttttctcatgcttgtaactcataaaatggcca----atgggacaatattgtgcag--
||| ||||  ||||||||||| || ||||| || || ||||| |||||||| ||||| || ||||||||||| || ||||| || || |||||||  |||||   || |||   | |||| ||  |      |     | | | |  || |   |  ||  ||   ||  |  |  |      |||    |  |     ||   
TGTGTGGTTCCCACAGCCAGCACCAAAGGATCACCCCTGGCGCTACATGCCTAACCATGCCATGACCCCTCACATCTCTGGGACTACAATTGATGAGCAGgt---caggttctgagttttgttacctgagtttgaaaatctatctaattctaatac-ctcataggacactaggtctctgcttcatgcattagcagaactcaata

upper sequence: Vv14s0066g01320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G423972_T02 (Zea mays), 5'ss of exon 4
TGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagtttctacttttcttctccttcccttcccgtatttttgcttttctcatgcttgtaactcataaaatggcca----atgggacaatattgtgcag--
||| ||||  ||||||||||| || ||||| || || ||||| |||||||| ||||| || ||| ||||||| || ||||| || || |||||||| |||||   || |||   | |||| ||  |      |     | | | |  || |   |  ||  ||   ||  |  |  |      |||    |  |     ||   
TGTGTGGTTCCCACAGCCAGCACCAAAGGATCACCCCTGGCGCTACATGCCTAACCATGCCATGGCCCCTCACATCTCTGGGACTACAATTGATGCGCAGgt---caggttctgagttttgttacctgagtttgaaaatctatctaattctaatac-ctcataggacactaggtctctgcttcatgcattagcagaactcaata

upper sequence: Vv14s0066g01320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G418005_T01 (Zea mays), 5'ss of exon 4
TGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagtttctacttttcttctccttcccttcccgtatttttgcttttctcatgcttgtaactcataaaatggcca----atgggacaatattgtgcag--
||| ||||  ||||||||||| || ||||| || || ||||| |||||||| ||||| || ||||||||||| || ||| | || || |||||||| |||||   || |||   | |||| ||  |      |     | | | |  || |   |  ||  ||   ||  |  |  |      |||    |  |     ||   
TGTGTGGTTCCCACAGCCAGCACCAAAGGATCACCCCTGGCGCTACATGCCTAACCATGCCATGACCCCTCACATCTCTAGGACTACAATTGATGCGCAGgt---caggttctgagttttgttacctgagtttgaaaatctatctaattctaatac-ctcataggacactaggtctctgcttcatgcattagcagaactcaata

upper sequence: Vv14s0066g01320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G362021_T01 (Zea mays), 5'ss of exon 7
TGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagtttctacttttcttctccttcccttcccgtatttttgcttttctcatgcttgtaactcataaaatggcca----atgggacaatattgtgcag--
      ||  ||| ||||||| || ||||| || || ||||| |||||||| ||||| || ||||||||||| || ||||| || || |||||||| || ||   || |||   | |||| ||  |      |     | | | |  || |   |  ||  ||   ||  |  |  | |    |||    |  |     ||   
------GTTCCCATAGCCAGCACCAAAGGATCACCCCTGGCGCTACATGCCTAACCATGCCATGACCCCTCACATATCTGGGACTACAATTGATGCGCATgt---caggttctgagttttgttacctgagtttgaaaatctatctaattctaatac-ctcataggacactaggtctctacttcatgcattagcagaactcaata

upper sequence: Vv14s0066g01320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G23790.3 (Glycine max), 5'ss of exon 6
TGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtaccc-aagtttctacttttcttctccttcccttcccgtatttttgcttttctcatgcttgtaactcataaaatggccaatgggacaatattgtgcag
||||||||  ||||||||||| || ||||| ||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||    || ||||||     ||    ||| || |    ||  |  | | ||    |   || ||| | ||| ||    |||    |||  |||| |||
TGTTTGGTTCCCACAGCCAGCTCCAAAGGATCATCCATGGCGTTACATGCCAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAGgtattttaaatttctatagcactag--cttgcccttttttacctaagttatttcacttggtggaacac-taacattaagaataaaccaaacttgttcag

upper sequence: Vv14s0066g01320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G01200.1 (Glycine max), 5'ss of exon 5
TGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacc-----caagtttctacttttcttctccttcccttcccgtatttttgcttttctcatgcttgtaactcataaaa---tggccaatgggacaatattgtgcag--------------
|||||||     ||| ||||| || ||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||        |||||||||  |   |  || ||  |||  | | || |  ||    || | |||  |  | ||  ||   |    |||     |||| |   |                
TGTTTGGCCCATACAACCAGCTCCAAAGGACCATCCATGGCGCTACATGCCAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAGgtattttcattaagtttctatatcattattcattagcttagctttttgtgtctaagttctttctttcacttgatggaacactaattaattaattaatactaaaccatacttgtttttcag

upper sequence: Vv14s0066g01320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G01210.4 (Glycine max), 5'ss of exon 5
TGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacc-----caagtttctacttttcttctccttcccttcccgtatttttgcttttctcatgcttgtaactcataaaa---tggccaatgggacaatattgtgcag--------------
||||||||  ||||| ||||| || ||||| ||||||||||| |||||||||||||| || ||||| |||||||||||||| |||||||||||||||||||||        |||||||||  |   |  || ||  |||  | | || |  ||    || | |||  |  | ||  ||   |    |||     |||| |   |                
TGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCATGGCGCTACATGCCAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGgtattttcattaagtttctatatcattattcattagcttagctttttgtgtctaagttctttctttcacttgatggaacactaattaattaattaatactaaaccatacttgtttttcag

upper sequence: Vv14s0066g01320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S106_16V6.2 (Physcomitrella patens), 5'ss of exon 8
TGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaag--tttctacttttc---ttctccttcccttcccgtatttttgcttttctcatgcttgta-actcataaaatggccaat---gggacaatattgtgcag---------------------
||| ||| |  | ||||| ||    ||||||||||| ||||| |||||||| ||||| || |||||||| ||||| || ||||| ||| | || || |||||    ||   |  | ||  ||    ||    |  |  ||     ||  ||| || |      |   | |  | | | ||    |||    | | |||  |   ||                      
TGTATGGAACGCTCAGCCGGCAGGAAAGGACCATCCTTGGCGTTACATGCCGAACCACGCCATGACCCCCCATATCTCCGGCACGACCCTCGACGCCCAGgtgatgaaagctccccaccattaggattacagtatcagtcttaatttcctgcattgcaagcattatcagaggcttcatatctataattccagaaaaatcctactcataaattcctcctcctcttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352763995|gb|FQ467565.1|FQ467565
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCGGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|161715982|gb|FC065526.1|FC065526
EST:     CAAACCAAGCTATGATCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|30130146|gb|CB915485.1|CB915485
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|28961860|gb|CB340934.1|CB340934
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|22012396|gb|BQ797430.1|BQ797430
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|22009020|gb|BQ794054.1|BQ794054
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|110708144|gb|EE085353.1|EE085353
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAAGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|352789699|gb|FQ476297.1|FQ476297
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|352764468|gb|FQ472825.1|FQ472825
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|34320409|gb|CF373163.1|CF373163
EST:     AAACCCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: AAA-CCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|110381028|gb|EC946337.1|EC946337
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|87586475|gb|DY474726.1|DY474726
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|28963772|gb|CB342805.1|CB342805
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCCCCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|352794929|gb|FQ477039.1|FQ477039
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|22013923|gb|BQ798957.1|BQ798957
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|352763854|gb|FQ465304.1|FQ465304
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGATACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|110724839|gb|EE101020.1|EE101020
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|46918254|gb|CN547583.1|CN547583
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|22012397|gb|BQ797431.1|BQ797431
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|110412411|gb|EC978159.1|EC978159
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|110406155|gb|EC971718.1|EC971718
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|110403322|gb|EC964843.1|EC964843
EST:     CAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|110407190|gb|EC972787.1|EC972787
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|352764651|gb|FQ469726.1|FQ469726
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|110716652|gb|EE091831.1|EE091831
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|34550843|gb|CF519059.1|CF519059
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCCCCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|110715960|gb|EE090523.1|EE090523
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|352777462|gb|FQ474096.1|FQ474096
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACCTGCTAGACAGGTACTTCAAGGGG
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|30251211|gb|CB968944.1|CB968944
EST:     CATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|34361893|gb|CF403478.1|CF403478
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|110367397|gb|EC931329.1|EC931329
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|110728292|gb|EE103735.1|EE103735
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|352782551|gb|FQ476631.1|FQ476631
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACTTGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|33409105|gb|CF214732.1|CF214732
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGGGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|45771134|gb|CN006986.1|CN006986
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|22011516|gb|BQ796550.1|BQ796550
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|34543645|gb|CF511877.1|CF511877
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACGATCGAGG-
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACT-TCAAGGG
EST: gi|352782128|gb|FQ470030.1|FQ470030
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|110421009|gb|EC987296.1|EC987296
EST:     CTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|22009993|gb|BQ795027.1|BQ795027
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|34549973|gb|CF518205.1|CF518205
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|110685824|gb|EE062884.1|EE062884
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|32246066|gb|CD711885.1|CD711885
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
EST: gi|110381266|gb|EC946589.1|EC946589
EST:     CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAG                         TTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA
genomic: CAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagt ... tattgtgcagTTGCGATACGCAGCTGGAGTGAAGGACATGCTAGACAGGTACTTCAAGGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCACCATTGATGCACAGgtacccaagtttctacttttcttctccttcccttcccgtatttttgcttttctcatgcttgtaactcataaaatggccaatgggacaatattgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT