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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGTGACTGTTTCATCCCCCGGGGACAGCCCCAATACGGACGGAATCCACCTACAGAACTCCCAAAATGTGGTGATCTATAGCACAAATCTAGCTTGTGgtaaatccaaaaaccttaaaagtcttgcgacttgtccttttgagaacacaagcaccacggctggtcatttttgctagtagaagcgtaacttgcgcaaaattatggcagagtcctcacaaaattggtcatcattgacatctaagttcatcagtaacgttaactcataatgcattctacag

Basic information

species Vitis vinifera
transcript Vv14s0066g01060.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161706245|gb|FC055437.1|FC055437
EST:     CCTACAGAACTCCCAAAATGTGGTGATCTATAGCACAAATCTAGCTTGTG                         GAGACGACTGTGTATCAATACAGACAGGATGC
genomic: CCTACAGAACTCCCAAAATGTGGTGATCTATAGCACAAATCTAGCTTGTGgtaaatccaa ... cattctacagGAGACGACTGTGTATCAATACAGACAGGATGC
EST: gi|110371123|gb|EC934902.1|EC934902
EST:     CCTACAGAACTCCCAAAATGTGGTGATCTATAGCACAAATCTAGCTTGTG                         GAGACGACTGTGTATCAATACAGACAGGATGCTCAAATATATTCGTACACA
genomic: CCTACAGAACTCCCAAAATGTGGTGATCTATAGCACAAATCTAGCTTGTGgtaaatccaa ... cattctacagGAGACGACTGTGTATCAATACAGACAGGATGCTCAAATATATTCGTACACA
EST: gi|110381463|gb|EC934529.1|EC934529
EST:     CCTACAGAACTCCCAAAATGTGGTGATCTATAGCACAAATCTAGCTTGTG                         GAGACGACTGTGTATCAATACAGACAGGATGCTCAAATATATTCGTACACA
genomic: CCTACAGAACTCCCAAAATGTGGTGATCTATAGCACAAATCTAGCTTGTGgtaaatccaa ... cattctacagGAGACGACTGTGTATCAATACAGACAGGATGCTCAAATATATTCGTACACA
EST: gi|110363249|gb|EC926825.1|EC926825
EST:     CCTACAGAACTCCCAAAATGTGGTGATCTATAGCACAAATCTAGCTTGTG                         GAGACGACTGTGTATCAATACAGACAGGATGCTCAAATATATTCGTACACA
genomic: CCTACAGAACTCCCAAAATGTGGTGATCTATAGCACAAATCTAGCTTGTGgtaaatccaa ... cattctacagGAGACGACTGTGTATCAATACAGACAGGATGCTCAAATATATTCGTACACA