Sequence
atgc intronic sequence ATGC exonic sequenceGGGTCCAACTGTTTTGGTACTCTCACCAACTAGGGAGTTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGAAGATCATCAAGACTTTCATGCACAgtttgttacttgcaactcttaatacctttttgctgtttaggaaaaatgattgttttaattgctgatgttagttctcatttgtttttgtcttttaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0066g01020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G078826_T02 (Zea mays), 5'ss of exon 3
GGGTCCAACTGTTTTGGTACTCTCACCAACTAGGGAGTTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGAAGATCATCAAGACTTTCATGCACAgtttgttacttgcaactcttaatacctttttgctgtttaggaaaaatgattgttttaattgctgatgttagttctcatttgtttttg---tcttttaag-
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TGGCCCAACAGTGCTAGTTTTGGCCCCAACAAGGGAACTTGCAACACAGATTCTGGATGAAGCTGTGAAATTTGGAAGATCTTCAAGAATTTCTTGCACGgtttgttccctctatctgttttaatatacaaatgatcatgaatatatgtctaaccaggatattaattcaaaaaatatttcgaaaaaaaaaactattgacc
upper sequence: Vv14s0066g01020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G077125_T01 (Zea mays), 5'ss of exon 3
GGGTCCAACTGTTTTGGTACTCTCACCAACTAGGGAGTTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGAAGATCATCAAGACTTTCATGCACAgtttgtt--acttgcaactcttaatacctttttgctgtttaggaaaaatgattgttttaattgctgatgttagttctcatttgtttttgtcttttaag---
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TGGTCCAACAGTGCTAGTTTTGGCCCCAACAAGGGAACTTGCAACGCAGATTCTGGATGAAGCTATGAAATTTGGAAGATCATCTAGAATTTCTTGCACGgtttgttctgtctgtatctattttaatatacaaatggtcacgattttatgttttaccaggttattaattcaaaaaaccttctgagga-atgtttaaactgt
upper sequence: Vv14s0066g01020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G066440_T01 (Zea mays), 5'ss of exon 6
GGGTCCAACTGTTTTGGTACTCTCACCAACTAGGGAGTTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGAAGATCATCAAGACTTTCATGCACAgtttgttactt-----------gcaactcttaatacctttttgctgtttagga--aaaatgattgttttaattgctgatgttagttctcatttgtttttgtcttttaag
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AGGTCCAACAGTATTAGTTTTGTCCCCAACCAGGGAATTGGCAACACAAATTCAAGATGAAGCAATCAAGTTTGGCAGATCTTCAAGAATATCTTCTACTgtatgttgctttatattttcttatatctgttattatcattactctgcctaggtctagaacatttgtcgtgttt--taaaatgaattaac-tacgttgatgcct------
upper sequence: Vv14s0066g01020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G08750.1 (Glycine max), 5'ss of exon 9
GGGTCCAACTGTTTTGGTACTCTCACCAACTAGGGAGTTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGAAGATCATCAAGACTTTCATGCACAgtttgttact--tgcaactctta--atacctttttgctgtttaggaaaaatgatt--gttttaattgc--tgatgttagtt------ctcatttgtttttgtcttttaag------------------------------------------------------------------------------------
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GGGCCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTGGCAACACAGATACAAGATGAAGCTGTGAAATTTGGGAAATCATCTAGAATTTCATGTGCTgtaagtaattgttctcattttcatcaaattatttttttgttgggttttcatgcttcagcttgggttcctttgaaattttttgatgaactcacaaatttgagattgttaaatgaatattgcttgtagtatcattcttcattggattgcctggctgggtttgctactatttatttattcattcattatttttatag
upper sequence: Vv14s0066g01020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G00260.1 (Glycine max), 5'ss of exon 5
GGGTCCAACTGTTTTGGTACTCTCACCAACTAGGGAGTTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGAAGATCATCAAGACTTTCATGCACAgtttgtta-----cttgcaactcttaa--tacctttttgctgt----ttaggaaaaatgattgttttaattgctgatgttagtt--ctcatttgtttttgtcttttaag-------------------------------------------------------------------------------
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GGGCCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTGGCAACACAGATACAAGATGAAGCCATGAAGTTTGGGAAATCATCTAGAATTTCATGTGCAgtaagtaattgttcttatttttatcaaattatttttttgttgtgctttcatgcatcagtatggattcatttgaaattattgatgaactcacaaatttgagtttgttaaacaaatattgcttgtagtatcattcttcattggattgcttggctggttttgctactctttatttattcatttttttatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161706631|gb|FC055861.1|FC055861EST: TACAAGATGAAGCTGTGAAGTTTGGAAGATCATCAAGACTTTCATGCACG TGTGTGTATGGAGGAGCACCAAAGGGTCCCCAGTTGAGAGATCTAGACAGA
genomic: TACAAGATGAAGCTGTGAAGTTTGGAAGATCATCAAGACTTTCATGCACAgtttgttact ... gtcttttaagTGTTTGTATGGAGGAGCACCAAAGGGTCCCCAGTTGAGAGATCTAGACAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGTCCAACTGTTTTGGTACTCTCACCAACTAGGGAGTTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGAAGATCATCAAGACTTTCATGCACAgtttgttacttgcaactcttaatacctttttgctgtttaggaaaaatgattgttttaattgctgatgttagttctcatttgtttttgtcttttaag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA