Sequence
atgc intronic sequence ATGC exonic sequenceATCAACCTTCAATTCCGCCTGTAACTCAGAGGCCAGCTAGGGCCAATTCCGACATACCAAGATCAGGATCTTTTATGCACCCCTTCCTTGTTGGTCACAGgtaatccttgataaatatgtgaagtagtttttgggtgatactcgttttaaggatttcatgttttaaatgcgaagtctaccatgatgccttttggtatggg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0060g02280.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G29230.1 (Glycine max), 5'ss of exon 5
ATCAACCTTCAATTCCGCCTGTAACTCAGAGGCCAGCTAGGGCCAATTCCGACATACCAAGATCAGGATCTTTTATGCACCCCTTCCTTGTTGGTCACAGgtaatcctt---gataaatatgtga-agtagtttttgggtgatactcgttttaaggatttcatgttttaaatgcg-aagtctaccatgatgccttttggtatggg
|||| || ||| | | |||| | ||| |||||||| |||| ||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | | || |||| |||| | | | ||| | || | | || || || |||| || ||||| | | ||
ATCAGCCATCAGTATCCCCTGGTAGTCAAAGGCCAGCCAGGGGTGGTTCGGATGTACCAAGATCAGGATCTTTTATGCATCCCTTCCTTGTTGGTCACAGgtaccactttagagttgacataccctagtaattttattctcttttttttttgcatgagtgtaagtaatacttgttcaagtttaatttgatgagtga-gcta----
upper sequence: Vv14s0060g02280.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G38050.2 (Glycine max), 5'ss of exon 5
ATCAACCTTCAATTCCGCCTGTAACTCAGAGGCCAGCTAGGGCCAATTCCGACATACCAAGATCAGGATCTTTTATGCACCCCTTCCTTGTTGGTCACAGgtaatccttgataaatatgtgaagtagtttt-tgggtgatactcgttttaaggatttcatgtt---ttaaatgcgaagt--ctaccatgatgccttttggtatggg
|||| || ||| | | |||| | ||| |||||||| |||| ||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| || | | | || || || | ||| | |||| | || || || | | |||| | | | | | | | |||
ATCAGCCATCAGTATCCCCTGGTAGTCAAAGGCCAGCCAGGGGTGGTTCGGATGTACCAAGATCAGGATCTTTTATGCATCCCTTCCTTGTTGGTCACAGgtaccactctagagtt----gacataccttagtaaaatatatttgtttgcatgagttaatacttgttcaaatttaatttgacgagtgagctaaaccataatata--
upper sequence: Vv14s0060g02280.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G39490.1 (Glycine max), 5'ss of exon 5
ATCAACCTTCAATTCCGCCTGTAACTCAGAGGCCAGCTAGGGCCAATTCCGACATACCAAGATCAGGATCTTTTATGCACCCCTTCCTTGTTGGTCACAGgtaatccttgataaatatgtgaagtagtttttgggtgatactcgttt-taaggatttcatgttttaaatgcgaagtctaccatgatgccttttggtatggg-
| || | ||| | | |||| | ||| ||||| || ||| ||| || | || ||||| || ||||||||||| |||||||||||||||||||||| ||| || | | | ||| | | ||| || ||| | | ||||| || || ||| || | || | |
AACAGACCTCAGTATCACCTGGTAGTCAAAGGCCTGCCCGGGGTGGTTCAGATGTCCCTAGATCCGGGTCTTTTATGCATCCCTTCCTTGTTGGTCACAGgtgcctctttgtaccttactaggatgctttagtatttgtggaagttagtatattgctcaagcctcaaatgtataggctcacat--tgttgtatgctgtcaaa
upper sequence: Vv14s0060g02280.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G42100.1 (Glycine max), 5'ss of exon 5
ATCAACCTTCAATTCCGCCTGTAACTCAGAGGCCAGCTAGGGCCAATTCCGACATACCAAGATCAGGATCTTTTATGCACCCCTTCCTTGTTGGTCACAGgtaatccttgataaatatgtgaagtagtttt---tgggtgatactcgttttaaggatttcatgttttaaatgcgaagtctaccatgatgccttttggtatggg
| || | ||| | | |||| | ||| ||||| || |||| ||| || | || ||||| || ||||||||||| |||||||||||||||||||||| ||| || | | | ||| | ||| | | | || | | | || | | ||| || || ||| | ||
AACAGGCCTCAGTATCACCTGGTAGTCAAAGGCCTGCCAGGGTTGGTTCAGAGGTCCCTAGATCCGGGTCTTTTATGCATCCCTTCCTTGTTGGTCACAGgtgcctctttgtaccttactaggatgctttagtatttgtggaagttagtatattgctcaaggctcatattgttgtattctgtca-aatacctaaagaaatt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110370697|gb|EC932708.1|EC932708EST: GACATACCAAGATCAGGATCTTTTATGCACCCCTTCCTTGTTGGTCACAG TTCTGGTGCTAGAGCTGGGAGCTCCGTCGCATCCTCAATGATTCCTCCTTA
genomic: GACATACCAAGATCAGGATCTTTTATGCACCCCTTCCTTGTTGGTCACAGgtaatccttg ... atttccacagTTCTGGTGCTAGAGCTGGGAGCTCCGTCGCATCCTCAATGATTCCTCCTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCAACCTTCAATTCCGCCTGTAACTCAGAGGCCAGCTAGGGCCAATTCCGACATACCAAGATCAGGATCTTTTATGCACCCCTTCCTTGTTGGTCACAGgtaatccttgataaatatgtgaagtagtttttgggtgatactcgttttaaggatttcatgttttaaatgcgaagtctaccatgatgccttttggtatggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgataaa