1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACTCCGCTGCTGGCCTGGTGGATTATGTCTCTCCAGGTCAATTGGTGACACAGATGTGGGAGAATTCATTGTCCCAATACCACATGTTAAGCAAGTGAAGgtgtgtgcaccttattttgtactggtgatggttttattgcatttgtggtagtccaccatattgtactggtgatatttttattactttctgatggtacattctaagttcaatctcttttaattgattattaag
species | Vitis vinifera |
transcript | Vv14s0060g01580.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAGATGTGGGAGAATTCATTGTCCCAATACCACATGTTAAGCAAGTGAAG CTTTCAAATGCTGGGGGACGGCTTATTATTGCTTCTGATGGAATCTGGGATEST: gi|110687916|gb|EE065868.1|EE065868
genomic: CAGATGTGGGAGAATTCATTGTCCCAATACCACATGTTAAGCAAGTGAAGgtgtgtgcac ... gattattaagCTTTCAAATGCTGGGGGACGGCTTATTATTGCTTCTGATGGAATCTGGGAT
EST: CAGATGTGGGAGAATTCATTGTCCCAATACCACATGTTAAGCAAGTGAAG CTTTCAAATGCTGGGGGACGGCTTATTATTGCTTCTGATGGAATCTGGGATEST: gi|71890427|gb|DT039482.1|DT039482
genomic: CAGATGTGGGAGAATTCATTGTCCCAATACCACATGTTAAGCAAGTGAAGgtgtgtgcac ... gattattaagCTTTCAAATGCTGGGGGACGGCTTATTATTGCTTCTGATGGAATCTGGGAT
EST: CAGATGTGGGAGAATTCATTGTCCCAATACCACATGTTAAGCAAGTGAAG CTTTCAAATGCTGGGGGACGGCTTATTATTGCTTCTGATGGAATCTGGGATEST: gi|254914412|gb|GR906513.1|GR906513
genomic: CAGATGTGGGAGAATTCATTGTCCCAATACCACATGTTAAGCAAGTGAAGgtgtgtgcac ... gattattaagCTTTCAAATGCTGGGGGACGGCTTATTATTGCTTCTGATGGAATCTGGGAT
EST: CAGATGTGGGAGAATTCATTGTCCCAATACCACATGTTAAGCAAGTGGAG CTTTCAAATGCTGGGGGACGGCTTATTATTGCTTCTGATGGAATCTGGGAT
genomic: CAGATGTGGGAGAATTCATTGTCCCAATACCACATGTTAAGCAAGTGAAGgtgtgtgcac ... gattattaagCTTTCAAATGCTGGGGGACGGCTTATTATTGCTTCTGATGGAATCTGGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTCCGCTGCTGGCCTGGTGGATTATGTCTCTCCAGGTCAATTGGTGACACAGATGTGGGAGAATTCATTGTCCCAATACCACATGTTAAGCAAGTGAAGgtgtgtgcaccttattttgtactggtgatggttttattgcatttgtggtagtccaccatattgtactggtgatatttttattactttctgatggtacattctaagttcaatctcttttaattgattattaag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG