Sequence
atgc intronic sequence ATGC exonic sequenceGGCACAGTTGAACGAACATGCAAAGCTGTCTATGCTCAGGAATGCTACCTGGACACTTTCAAATTTCTGTAGGGGCAAGCCACAGCCTCCTTTTGATCAGgtttgctgttttgaatgttctacttaactttgagaaaatgtgatggtagccaatagtatttatctcttcactatgcggctggacttggttttatgctctt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 5
GGCACAGTTGAACGAACATGCAAAGCTGTCTATGCTCAGGAATGCTACCTGGACACTTTCAAATTTCTGTAGGGGCAAGCCACAGCCTCCTTTTGATCAGgtttgctgttttgaatgttctacttaactttgagaaaatgtgat-ggtagccaatagtatttatctcttcactat-gcggctggacttggttttatgctctt
|| |||||||| || ||||| ||||| || ||| | |||||||| |||||||| || || || || || ||||| ||||||||||| | ||||||||||| | | || | | || || ||| | || ||| | || || | || || || ||| | | |
AGCCCAGTTGAATGAGCATGCGAAGCTCTCCATGTTGAGGAATGCCACCTGGACTCTGTCCAACTTTTGCAGGGGAAAGCCACAGCCATCATTTGATCAGgtc-gtagacaagacttctttaattgcttttctgtaacagtggttactaaataaacatgtt-attctttgactgttacag----------------------
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G29000.1 (Glycine max), 5'ss of exon 5
GGCACAGTTGAACGAACATGCAAAGCTGTCTATGCTCAGGAATGCTACCTGGACACTTTCAAATTTCTGTAGGGGCAAGCCACAGCCTCCTTTTGATCAGgtttgctgttttgaat-gttctacttaactttgagaaaatgtgatggtagccaatagtatt-tatctcttcactatgcggctg-gacttggttttatgctctt
|||||| || || |||||||| ||||| |||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | | || || | | | || || | | | | ||||||| | | | | |||| | || |||| | |
GGCACAATTAAATGAACATGCGAAGCTTTCTATGCTTAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGgtataaaaatatgtattgcttctcctagctaaccatttctttttcatttagctttagtattctgttaatatgatggaatgctgcaatttttttttgtaat---
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G38320.1 (Glycine max), 5'ss of exon 5
GGCACAGTTGAACGAACATGCAAAGCTGTCTATGCTCAGGAATGCTACCTGGACACTTTCAAATTTCTGTAGGGGCAAGCCACAGCCTCCTTTTGATCAGgtttgc-----tgttttgaatgttctacttaactttgagaaaatgtgatggtagccaatagtatttatctcttcactatgcggctggacttggttttatgctctt
|||||| || || |||||||| ||||| |||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||| ||| | | ||| ||||| | | | || | || | | | | | | |||| | || |||| | |
GGCACAATTAAATGAACATGCCAAGCTTTCTATGCTTAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGgtatgaaaatatgtattgcttctcctagttaaccatttcttttcatttcgcta--tagtattctctgttaatatgatggaatgctgcaattttttttttatt---
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G39210.1 (Glycine max), 5'ss of exon 6
GGCACAGTTGAACGAACATGCAAAGCTGTCTATGCTCAGGAATGCTACCTGGACACTTTCAAATTTCTGTAGGGGCAAGCCACAGCCTCCTTTTGATCAGgtttgctgttttgaatgttcta--cttaactttgagaaaatgtgatggtagccaatagtatttatctcttcactatgcggctggacttggttttatgctctt
|||||| ||||| || ||||| ||||| |||||||| || ||||||||||||||||| || |||||||| ||||| || ||||||||| ||||||||||||| || |||| ||||| | ||||| | | | || | || || | ||| |||||| | ||| | | | |
GGCACAATTGAATGAGCATGCCAAGCTTTCTATGCTAAGAAATGCTACCTGGACACTATCGAATTTCTGCAGGGGGAAACCACAGCCTGCTTTTGATCAGgtatgatgttatgaattgcatgatcttaaatatta-aagttttggctccttccttcatctttttattcttcattttgctataaaataaaatatctctcatg-
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G41770.1 (Glycine max), 5'ss of exon 5
GGCACAGTTGAACGAACATGCAAAGCTGTCTATGCTCAGGAATGCTACCTGGACACTTTCAAATTTCTGTAGGGGCAAGCCACAGCCTCCTTTTGATCAGgtttgctgttttgaatgttctacttaactttgagaaaatgtgatggtagccaatagtatttatctcttcactatgcggctggacttggttttatgctctt
|||||| ||||| || ||||| ||||| |||||||| || ||||||||||||||||| || |||||||| ||||| || ||||||||| ||||||||||||| || ||| | | | | | | | || || | | | || || ||| || | | | | | || | | | | ||
GGCACAATTGAATGAGCATGCCAAGCTTTCTATGCTAAGAAATGCTACCTGGACACTATCGAATTTCTGCAGGGGGAAACCACAGCCTGCTTTTGATCAGgtatgaagttatctgttatgcattgcatggtctaaatattgaagttttggcaccttccttcgtctttttattcttcattttgatatagaataaaatatttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110359173|gb|EC920237.1|EC920237EST: GGACACTTTCAAATTTCTGTAGGGGCAAGCCACAGCCTCCTTTTGATCAG ACAAAGCCTGCTCTTCCAGCACTTGAGCGTCTTATTCACTCAAATGATGAA
genomic: GGACACTTTCAAATTTCTGTAGGGGCAAGCCACAGCCTCCTTTTGATCAGgtttgctgtt ... tgttgcacagACAAAGCCTGCTCTTCCAGCACTTGAGCGTCTTATTCACTCAAATGATGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCACAGTTGAACGAACATGCAAAGCTGTCTATGCTCAGGAATGCTACCTGGACACTTTCAAATTTCTGTAGGGGCAAGCCACAGCCTCCTTTTGATCAGgtttgctgttttgaatgttctacttaactttgagaaaatgtgatggtagccaatagtatttatctcttcactatgcggctggacttggttttatgctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaaa