1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGCTGGTGGTATTGCTGAAATGGCTGGAATGAGCCACAAAATACGTCAAAGAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAGgtaaattctatccatttatcgttggcttggatcagtgtataagttgtggattagaaccaattgagataactttaatcaaactcgctattggatcagctgtcattgtgtcatcaaggtagtcaaatttactaaatcgtttacattctatgcatttgttcag
species | Vitis vinifera |
transcript | Vv14s0060g01280.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAG GGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCCEST: gi|110710234|gb|EE086401.1|EE086401
genomic: GAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAGgtaaattcta ... atttgttcagGGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCC
EST: GAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAG GGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCCEST: gi|110692572|gb|EE071970.1|EE071970
genomic: GAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAGgtaaattcta ... atttgttcagGGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCC
EST: GAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAG GGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCCEST: gi|110726314|gb|EE101985.1|EE101985
genomic: GAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAGgtaaattcta ... atttgttcagGGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCC
EST: GAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAG GGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCCEST: gi|30299286|gb|CB976080.1|CB976080
genomic: GAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAGgtaaattcta ... atttgttcagGGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCC
EST: GAACTGATGCTCTGGATGCTGCTGGAAACATCACTGCTGCCATTGGCAAG GGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCCEST: gi|110718290|gb|EE094955.1|EE094955
genomic: GAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAGgtaaattcta ... atttgttcagGGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCC
EST: GAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAG GGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCCEST: gi|110719241|gb|EE096994.1|EE096994
genomic: GAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAGgtaaattcta ... atttgttcagGGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCC
EST: GAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAG GGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCCEST: gi|110703428|gb|EE080264.1|EE080264
genomic: GAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAGgtaaattcta ... atttgttcagGGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCC
EST: GAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAG GGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCCEST: gi|294965221|gb|GW838908.1|GW838908
genomic: GAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAGgtaaattcta ... atttgttcagGGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCC
EST: GAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAG GGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCCEST: gi|110723031|gb|EE099877.1|EE099877
genomic: GAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAGgtaaattcta ... atttgttcagGGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCC
EST: GAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAA GGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCCEST: gi|34550177|gb|CF518395.1|CF518395
genomic: GAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAGgtaaattcta ... atttgttcagGGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCC
EST: GAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAG GGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCCEST: gi|18458099|gb|BM436377.1|BM436377
genomic: GAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAGgtaaattcta ... atttgttcagGGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCC
EST: GCTGCCATTGGCAAG GGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCC
genomic: GCTGCCATTGGCAAGgtaaattcta ... atttgttcagGGTTTCGCTATTGGATCAGCTGCTCTTGTTTCTCTTGCTCTGTTTGGTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGGTGGTATTGCTGAAATGGCTGGAATGAGCCACAAAATACGTCAAAGAACTGATGCTCTGGATGCTGCTGGAAACACCACTGCTGCCATTGGCAAGgtaaattctatccatttatcgttggcttggatcagtgtataagttgtggattagaaccaattgagataactttaatcaaactcgctattggatcagctgtcattgtgtcatcaaggtagtcaaatttactaaatcgtttacattctatgcatttgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC