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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTGAGTATGTTCCTGAAACTGTTCATCGGGTTATTAAACACTACAATAAGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgttaattatttaaatttattttcattatggtctcttctatgttgtgtttttgcaaaagtctatatggttgtaaagtttaaatctctttttatcccagcggctgctgaaattgtaatatattgtttttatttgatag

Basic information

species Vitis vinifera
transcript Vv14s0060g00600.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G28530.2 (Glycine max), 5'ss of exon 5
ACTTGAGTATGTTCCTGAAACTGTTCATCGGGTTATTAAACACTACAATAAGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgttaattatttaaatttattttcattatggtctcttctatgttgtgtttttgcaaaagtctatatggttgtaaagtttaaatctctttttatcccagcggctgctgaaattgtaatatattgtttttatttgatag
 || ||||||||||||||||| ||| ||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    |     ||      | | | ||    | |||| ||  ||||  |  | |   ||  | | | |  |  |  ||                                                             
TCTCGAGTATGTTCCTGAAACAGTTAATCGGGTGATAAAACATTACAACAAGTTGAACCAAAGGATGCCACTGATATATGTGAAACTCTATACATACCAGgtatgactgttgcccttc----ctgtctcca----gctctcatcgttgttcaggctgtaacaatattttttttatgttgcag-------------------------------------------------------------

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G22600.3 (Glycine max), 5'ss of exon 5
ACTTGAGTATGTTCCTGAAACTGTTCATCGGGTTATTAAACACTACAATAAGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtgg-tgttaattatttaaattta--ttttcattatggtctcttctatgttg--tgtttttgcaaaagtctatatggttgtaaagtttaaatctctttttatcccagcggctgctgaaattgtaatatattgtttttatttgatag
|||||| |||||||||||||| ||| |||| || || ||||| ||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||||| ||  ||||     |      |||   |||||| || ||     || |      | ||||||  | | |  |                                                                          
ACTTGAATATGTTCCTGAAACAGTTAATCGTGTGATCAAACATTACAACAAGTTAAACCAAAGGATGCCGCTGATATATGTGAAACTCTATACATACCAGgtatgactgttgcccttcctgtcttaagctttcataattgttctggctgtaacaattatttttgatatatttcag-------------------------------------------------------------------------

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G38850.2 (Glycine max), 5'ss of exon 5
ACTTGAGTATGTTCCTGAAACTGTTCATCGGGTTATTAAACACTACAATAAGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgttaattatttaaatttattttcattatggtc-tcttctatgttgtgtttttgcaaaagtctatatggttgtaaagtttaaatctctttttatcccagcggctgctgaaattgtaatatattgtttttatttgatag
||||||||||||||||||||| ||| |||| || || ||||| ||||| |||||||||||| ||||||| ||||||||||| || ||||||||||||||||| || |  |||| || | | |||  |||  | |||  | | || |  ||| | |||| | |||   |  | |   |||    |||  ||   ||| || |||                                         
ACTTGAGTATGTTCCTGAAACAGTTAATCGTGTGATCAAACATTACAACAAGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGgtatgct--taatcatgtcagtttggttttgtcatgacccttttgtcagttttattttggaaaatagccgtgttaatgt----tttggattattttctagccctct--------------------------------------

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G41420.3 (Glycine max), 5'ss of exon 5
ACTTGAGTATGTTCCTGAAACTGTTCATCGGGTTATTAAACACTACAATAAGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgttaattatttaaatttattttcattatggtc-tcttctatgttgtgtttttgcaaaagtctatatggttgtaaagtttaaatctctttttatcccagcggctgctgaaattgtaa-tatattgtttttatttgatag
||| ||||||||||| ||||| ||| |||| || || ||||| || || |||||||||||| ||||||| ||||||||||| || ||||||||||||||||| || |  |||| || | | |||  |||  | ||| || | || |  ||| | |||| | ||| | || | |   |||    ||  | | | || |||||  |       ||||  |||||  | | || ||  |||     ||
ACTGGAGTATGTTCCCGAAACAGTTAATCGTGTGATCAAACATTATAACAAGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGgtatgct--taatcatgtcagtttggttttgtcatgatccttttgtcagttttattttggaaaatggctttgttaatgtt---ttggattattttcttatctta-------ctgaggttgtatctgttttcttgatatactgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30325615|gb|CD008877.1|CD008877
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|32270380|gb|CD719539.1|CD719539
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|32270854|gb|CD720013.1|CD720013
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|71862026|gb|DT011081.1|DT011081
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|46917569|gb|CN546898.1|CN546898
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|71856504|gb|DT005559.1|DT005559
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|156737184|gb|EV241305.1|EV241305
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|161714435|gb|FC064434.1|FC064434
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|30326170|gb|CD009432.1|CD009432
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|110700433|gb|EE078469.1|EE078469
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|161718942|gb|FC067353.1|FC067353
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|110712249|gb|EE089658.1|EE089658
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCCTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|30256245|gb|CB972088.1|CB972088
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|110689423|gb|EE065633.1|EE065633
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCA
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCA
EST: gi|349828876|gb|FQ419209.1|FQ419209
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|30327244|gb|CD010506.1|CD010506
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|33405711|gb|CF211338.1|CF211338
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|32247650|gb|CD713469.1|CD713469
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGGAGTTTTGTCATA
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGG-AGTTT-GTCATA
EST: gi|30302437|gb|CB979231.1|CB979231
EST:     AGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|30327832|gb|CD011094.1|CD011094
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|71861763|gb|DT010818.1|DT010818
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|30327902|gb|CD011164.1|CD011164
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|30325367|gb|CD008629.1|CD008629
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|30325513|gb|CD008775.1|CD008775
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|110687881|gb|EE065793.1|EE065793
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCT
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCT
EST: gi|110694879|gb|EE072256.1|EE072256
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|34547149|gb|CF515381.1|CF515381
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|30325747|gb|CD009009.1|CD009009
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|30325454|gb|CD008716.1|CD008716
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|33404123|gb|CF209750.1|CF209750
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|71859213|gb|DT008268.1|DT008268
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|71864551|gb|DT013606.1|DT013606
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|110729460|gb|EE105432.1|EE105432
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|30132732|gb|CB918071.1|CB918071
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|71864720|gb|DT013775.1|DT013775
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
EST: gi|30323811|gb|CD007073.1|CD007073
EST:     AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAG                         ATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG
genomic: AGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgtt ... tatttgatagATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGAGTTTGTCATAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTTGAGTATGTTCCTGAAACTGTTCATCGGGTTATTAAACACTACAATAAGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgttaattatttaaatttattttcattatggtctcttctatgttgtgtttttgcaaaagtctatatggttgtaaagtttaaatctctttttatcccagcggctgctgaaattgtaatatattgtttttatttgatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC