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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatcttttggaataaaaaattgccttctgccactttggtatttatgcaaaaaaaaaaaaaaacagatcttcacaggcctatgtttaagtgtttt...

Basic information

species Vitis vinifera
transcript Vv14s0060g00550.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g00550.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G09430.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatcttttggaataaaaaattgccttctgccactttggtatttatgcaaaaaaaaaaaaaaacagatcttcacaggcctatgtttaagtgtttt-----
|||||||  ||||| ||  ||||||||| |||||| ||||||||||||||||||||| | | | || || ||        | |  ||  |||||| |  | || | | |      ||  |||  |  | |     |||  | |  || | ||     
GTTCGAGCTAAAATCGGCAACTTCATAATGGGTGCCTTTGCTGTATTTCAAGgtatg-agtatattagattagg---ccacttcttg--actttgct-ctgattcgagatctctcaaggacatcttcttatta-tctacttgtgtgtttctttaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71860005|gb|DT009060.1|DT009060
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACTCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|110713529|gb|EE089531.1|EE089531
EST:     TCGAGGGAAAATTGGTGACTTCATAAAAGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTATCCTGGTTGAATGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGT-GAATGGG
EST: gi|33409351|gb|CF214978.1|CF214978
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|110724668|gb|EE100695.1|EE100695
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|71859858|gb|DT008913.1|DT008913
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTGGACTTCAGTTTCCTAGA
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGA
EST: gi|351042212|gb|FQ442679.1|FQ442679
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|110424854|gb|EC991228.1|EC991228
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|351036953|gb|FQ459475.1|FQ459475
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|71857295|gb|DT006350.1|DT006350
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGGGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAA
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAA
EST: gi|30256302|gb|CB972145.1|CB972145
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         G
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacag-
EST: gi|30256302|gb|CB972145.1|CB972145
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         G
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacag-
EST: gi|71857604|gb|DT006659.1|DT006659
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|71862250|gb|DT011305.1|DT011305
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCT
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCT
EST: gi|33404234|gb|CF209861.1|CF209861
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGACGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|71870674|gb|DT019729.1|DT019729
EST:     CTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: CTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|352794639|gb|FQ475137.1|FQ475137
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|71864745|gb|DT013800.1|DT013800
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACC
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACC
EST: gi|110712211|gb|EE089572.1|EE089572
EST:     TCGAGGGAAAATTGGTGACTTCATAAAAGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGACGAACC-ATTTACCCCTGGTGAATGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCC-TGGTGAATGGG
EST: gi|156735476|gb|EV239597.1|EV239597
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|71858239|gb|DT007294.1|DT007294
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|161716198|gb|FC065858.1|FC065858
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTG
EST: gi|349832974|gb|FQ416352.1|FQ416352
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|110730113|gb|EE106821.1|EE106821
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAAAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|110718171|gb|EE094700.1|EE094700
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|110700143|gb|EE077843.1|EE077843
EST:     TCGAGGGAAAATTGGTGACTTCA-AA-GGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|71871769|gb|DT020824.1|DT020824
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|161714801|gb|FC063249.1|FC063249
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|161709750|gb|FC058051.1|FC058051
EST:     ATAAAGGGTGCGTTTGCTGTATTTC-AG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: ATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|110730321|gb|EE107269.1|EE107269
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|30301339|gb|CB978133.1|CB978133
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|71860260|gb|DT009315.1|DT009315
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACTCTGGTGAAT
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAAT
EST: gi|71855750|gb|DT004805.1|DT004805
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|294966761|gb|GW837780.1|GW837780
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|26256993|gb|CA808056.1|CA808056
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|30298235|gb|CB975029.1|CB975029
EST:     TTTGCTGTATTTC-AG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|71865022|gb|DT014077.1|DT014077
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTT
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTT
EST: gi|161711977|gb|FC060844.1|FC060844
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|161712114|gb|FC061486.1|FC061486
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|156735475|gb|EV239596.1|EV239596
EST:     TCGAGGGAAAATGGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|71864850|gb|DT013905.1|DT013905
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTC
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTC
EST: gi|110710640|gb|EE086952.1|EE086952
EST:     TCGAGGGAAAATTGGTGACTTCATAAAAGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|110723142|gb|EE100116.1|EE100116
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|352786083|gb|FQ481878.1|FQ481878
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|30253098|gb|CB970649.1|CB970649
EST:     CGAGGGAAAATTGGTGAC-TGANTAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: CGAGGGAAAATTGGTGACTTCA-TAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|71864834|gb|DT013889.1|DT013889
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAG
EST: gi|33409430|gb|CF215057.1|CF215057
EST:     TTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCTTGGTGAATGGGG
genomic: TTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|33409787|gb|CF215414.1|CF215414
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|71863671|gb|DT012726.1|DT012726
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTT
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTT
EST: gi|110724374|gb|EE100156.1|EE100156
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACC-ATTTNACCCTGGTGAATGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTT-ACCCTGGTGAATGGG
EST: gi|110712529|gb|EE090258.1|EE090258
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCCTGGTGAATGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCC-TGGTGAATGGG
EST: gi|110698064|gb|EE075650.1|EE075650
EST:     GGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCCTTTACCCTGGTGAATGGGG
genomic: GGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|37183558|gb|CF602912.1|CF602912
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|37188175|gb|CF607524.1|CF607524
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|161712274|gb|FC061897.1|FC061897
EST:     GGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: GGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|71865019|gb|DT014074.1|DT014074
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGA
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGA
EST: gi|110718559|gb|EE095528.1|EE095528
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCCGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGAAGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|161713803|gb|FC063791.1|FC063791
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTTACCCTGGTGAATGGGG
EST: gi|71864321|gb|DT013376.1|DT013376
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACC
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACC
EST: gi|71863533|gb|DT012588.1|DT012588
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATG
EST: gi|71857095|gb|DT006150.1|DT006150
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGA
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGA
EST: gi|352794923|gb|FQ477033.1|FQ477033
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAGG                         ATCTTGACTTCAGTTTCCTAGAGATGAACCCGTTTTACC-TGGTGAATGGG
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACCCATTT-ACCCTGGTGAATGGG
EST: gi|71862352|gb|DT011407.1|DT011407
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGTGTGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGTTTCCTAGAGATGAACC
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGTTTCCTAGAGATGAACC
EST: gi|71859756|gb|DT008811.1|DT008811
EST:     TCGAGGGAAAATTGGTGACTTCATAAAGGGGGCGTTTGCTGTATTTCAAG                         ATCTTGACTTCAGT
genomic: TCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatc ... ctctccacagATCTTGACTTCAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatcttttggaataaaaaattgccttctgccactttggtatttatgcaaaaaaaaaaaaaaacagatcttcacaggcctatgtttaagtgtttt

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