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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATGATGATTTCAATGCCAAGGTTTCTGATTTCGGCCTGGCCAAGTTGTTGGGTGCTGGGAAAAGTCATATCACAACTCGAGTTATGGGAACCTTTGGgtaagtattatttctagtgcatgatattacctagatgtctcaatgttttgttttcttattctagatattagtttattaagttattattttttacactgattgtggagggttacgtaatcatatctgatttctcatattcacttctcttaagctcctcaacctcctccctatctcttctaaatgttacag

Basic information

species Vitis vinifera
transcript Vv14s0060g00460.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g00460.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G38800.1 (Glycine max), 5'ss of exon 4
TTGATGATGATTTCAATGCCAAGGTTTCTGATTTCGGCCTGGCCAAGTTGTTGGGTGCTGGGAAAAGTCATATCACAACTCGAGTTATGGGAACCTTTGGgtaagtattatttctagtgcatgatattacctagatgtctcaatgtt-ttgttttcttattctagatattagtttattaagttattattttttacactgattgtggagggttacgtaatcatatctgatttctcatattcacttctcttaagctcctcaacctcctccctatctcttctaaatgttacag
|||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||| || |||||||  ||||||||||||| ||||||| |||| | ||| |  |       | |      ||| |||| | || ||    | || |   | | | |  ||  |||  || || |||  || |   |||    ||                                                                                  
TTGATGATGATTTCAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAATTATTGGGTGCTGGGAAGAGTTATGTCACAACAAGAGTTATGGGAACTTTTGGgtcagtaat-tttgtgctctgctgaagttttcccatg-ctcagtattgttaaaattttgtaagaaaaaattattc-ttattttcttttttgctataaatatttcacag----------------------------------------------------------------------------------

upper sequence: Vv14s0060g00460.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G28490.1 (Glycine max), 5'ss of exon 4
TTGATGATGATTTCAATGCCAAGGTTTCTGATTTCGGCCTGGCCAAGTTGTTGGGTGCTGGGAAAAGTCATATCACAACTCGAGTTATGGGAACCTTTGGgtaagtattatttctagtgcatgatattacctagatgtctcaatgttttgttttcttattctagatattagtttattaagttattattttttacactgattgtggagggttacgtaatcatatctgatttctcatattcacttctcttaagctcctcaacctcctccctatctcttctaaatgttacag
|||||||||| ||||||||||||||||||||||| ||||||||||||||  ||||| ||||||| |||||| |  |||| ||||||||||||||||||||||  ||||| ||         || | || |||| |   ||  ||| | | |||    | || |                     |||| || | |   | | ||  | |||   |  | | || |  | | || |  |  || |   |||  |   ||                               
TTGATGATGACTTCAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGTTACTGGGTTCTGGGAAGAGTCATGTTGCAACACGAGTTATGGGAACCTTTGGgtccgtattttt--------gtgctcttccctatagagct--atgctctttttctgcactcaa---------------------tattgttaagaggaactttgatgagttggatccttacatttattctttctttcttgctcca--taaaattgacag------------------------------

upper sequence: Vv14s0060g00460.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G22550.1 (Glycine max), 5'ss of exon 4
TTGATGATGATTTCAATGCCAAGGTTTCTGATTTCGGCCTGGCCAAGTTGTTGGGTGCTGGGAAAAGTCATATCACAACTCGAGTTATGGGAACCTTTGGgtaagtattatttctagtgcatgatattacctagatgtctcaatgttttgttttcttattctagatattagtttattaagttattat-tttttacactgattgtggagggttacgtaatcatatctgatttctcatattcacttctcttaagctcctcaacctcctccctatctcttctaaatgttacag
||||||| || || |||||||||||||||||||| |||||||||||| |  | ||| ||||||| |||||| |  |||| ||||||||||||||||||||||  ||||| ||    ||||       ||   || | | ||  | || ||   ||            ||  |   || | |   ||| ||| | |  |  | |||     | |  |   ||                                                                     
TTGATGACGACTTTAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGCTTCTTGGTTCTGGGAAGAGTCATGTTGCAACACGAGTTATGGGAACCTTTGGgtctgtattttt----gtgctcttccctatggagctatgtcctttttctgccctcaatggaggagctttgatgagttcaatccctatatttattcttttctcgtgctccataaaattgacag--------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110725970|gb|EE102993.1|EE102993
EST:     TTGGGTGCTGGGAAAAGTCATATCACAACTCGAGTTATGGGAACCTTTGG                         ATATGTGGCTCCTGAATATGCAAATACTGGCCTTTTGAATGAAAAAAGTGA
genomic: TTGGGTGCTGGGAAAAGTCATATCACAACTCGAGTTATGGGAACCTTTGGgtaagtatta ... aatgttacagATATGTGGCTCCTGAATATGCAAATACTGGCCTTTTGAATGAAAAAAGTGA
EST: gi|110415976|gb|EC981921.1|EC981921
EST:     TTGGGTGCTGGGAAAAGTCATATCACAACTCGAGTTATGGGAACCTTTGG                         ATATGTGGCTCCTGAATATGCAAATACTGGCCTTTTGAATGAAAAAAGTGA
genomic: TTGGGTGCTGGGAAAAGTCATATCACAACTCGAGTTATGGGAACCTTTGGgtaagtatta ... aatgttacagATATGTGGCTCCTGAATATGCAAATACTGGCCTTTTGAATGAAAAAAGTGA
EST: gi|34543460|gb|CF511692.1|CF511692
EST:     TTGGGTGCTGGGAAAAGTCATATCACAACTCGAGTTATGGGAACCTTTGG                         ATATGTGGCTCCTGAATATGCAAATACTGGCCTTTTGAATGAAAAAAGTGA
genomic: TTGGGTGCTGGGAAAAGTCATATCACAACTCGAGTTATGGGAACCTTTGGgtaagtatta ... aatgttacagATATGTGGCTCCTGAATATGCAAATACTGGCCTTTTGAATGAAAAAAGTGA
EST: gi|110403999|gb|EC969916.1|EC969916
EST:     TTGGGTGCTGGGAAAAGTCATATCACAACTCGAGTTATGGGAACCTTTGG                         ATATGTGGCTCCTGAATATGCAAATACTGGCCTTTTGAATGAAAAAAGTGA
genomic: TTGGGTGCTGGGAAAAGTCATATCACAACTCGAGTTATGGGAACCTTTGGgtaagtatta ... aatgttacagATATGTGGCTCCTGAATATGCAAATACTGGCCTTTTGAATGAAAAAAGTGA
EST: gi|161719711|gb|FC065745.1|FC065745
EST:     TTGGGTGCTGGGAAAAGTCATATCACAACTCGAGTTATGGGAACCTT-GG                         ATATGTGGCTCCTGA-TATGCAA-TACTGGCCTTT
genomic: TTGGGTGCTGGGAAAAGTCATATCACAACTCGAGTTATGGGAACCTTTGGgtaagtatta ... aatgttacagATATGTGGCTCCTGAATATGCAAATACTGGCCTTT