Sequence
atgc intronic sequence ATGC exonic sequenceTGGACATGGGATGCCCAAGATGAAACCTGTGGGATTTGTAGGATGGCATTTGATGGTTGTTGTCCTGATTGTAAACTCCCTGGAGATGATTGCCCACTAAgtaagtggctgactttggttactttattgtcttgctgttgtgtattcaagtttgcccagattctgaataatttcttatttttgtagttgaatatgcttat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0060g00290.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G28310.2 (Glycine max), 5'ss of exon 2
TGGACATGGGATGCCCAAGATGAAACCTGTGGGATTTGTAGGATGGCATTTGATGGTTGTTGTCCTGATTGTAAACTCCCTGGAGATGATTGCCCACTAAgtaagtggctgactttggttactttattgtc--ttgctgttgtgtattcaagtttgc-ccagattctgaataatttcttatttttg-tagttgaatatgcttat
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TGGACTTGGGATGCCCAGGATGAAACCTGTGGGATTTGTAGGATGGCCTTTGATGGATGTTGTCCTGACTGTAAACTTCCTGGAGATGACTGCCCATTGAgtaagctact---cttgatgatattattggcgactttcatcgt-tattatgttttgcaccaaattgtcttgagttatttttcttaactaatcttttatattttg
upper sequence: Vv14s0060g00290.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G22300.1 (Glycine max), 5'ss of exon 1
TGGACATGGGATGCCCAAGATGAAACCTGTGGGATTTGTAGGATGGCATTTGATGGTTGTTGTCCTGATTGTAAACTCCCTGGAGATGATTGCCCACTAAgtaagtggctgac-------tttggttacttt-attgtcttgctgttgtgtattcaagtttgcccag--attctgaataatttcttatttttgtagttgaatatgcttat
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TGGACTTGGGATGCCCAGGATGAAACCTGTGGGATTTGTAGGATGGCCTTTGATGGATGTTGTCCTGACTGCAAACTTCCTGGAGATGACTGCCCACTGAgtaagctattcataatattatatgacgactttcatcgttattatattttgcac-caaattgtcttagttatatttgttaattaatcctttgcattttggaa---------
upper sequence: Vv14s0060g00290.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G34030.1 (Glycine max), 5'ss of exon 2
TGGACATGGGATGCCCAAGATGAAACCTGTGGGATTTGTAGGATGGCATTTGATGGTTGTTGTCCTGATTGTAAACTCCCTGGAGATGATTGCCCACTAAgtaagtggctgactttggttactttattgtct-tgctgttgtgt-attcaagtttgcccagattctgaataatttcttatttttgtagttgaatatgcttat
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TGGACTTGGGATGCACAGGACGAAACGTGTGGGATTTGTAGGATGGCCTTTGATGGATGTTGTCCTGACTGTAAACTTCCTGGAGACGACTGCCCGCTGAgtaagctactgataatt-ttacatggcgatagacattgttattttacttgaatccattt-gtcttggttaaatttcttgattgatcattgtgttttgggaat
upper sequence: Vv14s0060g00290.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G05870.1 (Arabidopsis thaliana), 5'ss of exon 3
TGGACATGGGATGCCCAAGATGAAACCTGTGGGATTTGTAGGATGGCATTTGATGGTTGTTGTCCTGATTGTAAACTCCCTGGAGATGATTGCCCACTAAgtaa-gtggctgactttggttactttattgtcttgc-tgttgtgta---------------ttcaagtttgcccaga---ttctgaataatttcttatttttgtagttgaatatgcttat----------------------------------------------
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TGGACATGGGATGCTCAAGACGAAACATGTGGGATATGTCGGATGGCTTTTGATGGTTGTTGTCCTGATTGCAAACTTCCTGGAGATGATTGCCCTCTAAgtaaagttctcttctttcatgtcttcgcttttatatatgttgcttagaacacccactatttctcttgcttacggaaacattgctaaacatttacttatggtaataactcaaaacaaaactgcatgccttagaccttatctgttttggtgttttggtgtttgggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|46919036|gb|CN548365.1|CN548365EST: TGATGGTTGTTGTCCTGATTGTAAACTCCCTGGAGATGATTGCCCACTAA TTTGGGGTGCTTGCAACCATGCATTCCATTTCCATTGCATCTTGAAATGGG
genomic: TGATGGTTGTTGTCCTGATTGTAAACTCCCTGGAGATGATTGCCCACTAAgtaagtggct ... tgtcctgcagTTTGGGGTGCTTGCAACCATGCATTCCATCTCCATTGCATCTTGAAATGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGACATGGGATGCCCAAGATGAAACCTGTGGGATTTGTAGGATGGCATTTGATGGTTGTTGTCCTGATTGTAAACTCCCTGGAGATGATTGCCCACTAAgtaagtggctgactttggttactttattgtcttgctgttgtgtattcaagtttgcccagattctgaataatttcttatttttgtagttgaatatgcttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG