1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTGGGGCAATCCTTGGAGTTATTTGCAGCCTACAACTGAAATTAATGGAAGTTTGATTGCTTATCATCGCAAAATGGATCGGAGGTGGTGGCGAGCACAGgtgaaaccaatgttaatatagaagtggaaatttctgttttacatgcttctcctgcagctttatccgaatagttttcttcagtttttttagttggccttta...
species | Vitis vinifera |
transcript | Vv14s0036g01060.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTTTGATTGCTTATCATCGCAAAATGGATCGGAGGTGGTGGCGAGCACAG GCAGTACGCTACCTAATGAGGTTTCAAACTGAGTACACATGTGGCTTATTGEST: gi|110703597|gb|EE080580.1|EE080580
genomic: GTTTGATTGCTTATCATCGCAAAATGGATCGGAGGTGGTGGCGAGCACAGgtgaaaccaa ... atattttcagGCAGTACGCTACCTAATGAGGTTTCAAACTGAGTACACATGTGGCTTATTG
EST: GTTTGATTGCTTATCATCGCAAAATGGATCGGAGGTGGTGGCGAGCACAG GCAGTACGCTACCTAATGAGGTTTCAAACTGAGTACACATGTGGCTTATTGEST: gi|34543598|gb|CF511830.1|CF511830
genomic: GTTTGATTGCTTATCATCGCAAAATGGATCGGAGGTGGTGGCGAGCACAGgtgaaaccaa ... atattttcagGCAGTACGCTACCTAATGAGGTTTCAAACTGAGTACACATGTGGCTTATTG
EST: GTTTGATTGCTTATCATCGCAAAATGGATCGGAGGTGGTGGCGAGCACAG GCAGTACGCTACCTAATGAGGTTTCAAACTGAGTACACATGTGGCTTATTG
genomic: GTTTGATTGCTTATCATCGCAAAATGGATCGGAGGTGGTGGCGAGCACAGgtgaaaccaa ... atattttcagGCAGTACGCTACCTAATGAGGTTTCAAACTGAGTACACATGTGGCTTATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGGGCAATCCTTGGAGTTATTTGCAGCCTACAACTGAAATTAATGGAAGTTTGATTGCTTATCATCGCAAAATGGATCGGAGGTGGTGGCGAGCACAGgtgaaaccaatgttaatatagaagtggaaatttctgttttacatgcttctcctgcagctttatccgaatagttttcttcagtttttttagttggccttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctcc