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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGATACCGACCATGATTTTTTGATTGATAAAGAGAACCTAATCAGATATGGTAACCATGCACTTACCTATCGAATTGTTGATAGAATATTTTCCCAGgtttgtgtctgtcagataataaattcgttttttagatcaaatgagctgctttttacggaggagaatttcacattcgtgaatgcttcatctcttagtatttcttcgtttctctcag

Basic information

species Vitis vinifera
transcript Vv14s0036g00750.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0036g00750.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G104254_T02 (Zea mays), 5'ss of exon 4
GCTGGATACCGACCATGATTTTTTGATTGATAAAGAGAACCTAATCAGATATGGTAACCATGCACTTACCTATCGAATTGTTGATAGAATATTTTCCCAGgtttgtgtctgtcagataataaattcgttttttagatcaaatgagctgctttttacggaggagaatttcacattcgtgaatgcttcatctcttagtatttcttcgtttctctcag
||||||| | ||||| ||||||||||||||||| |||||||| |||| |||||| || ||| |  | |||||| | || ||||||||||| ||  | |||||| ||   |         | | || |   || | | || |   |||  || ||||  |  |   | | | |||    |   |||   || ||| ||                  
GCTGGATGCAGACCACGATTTTTTGATTGATAAGGAGAACCTCATCAAATATGGAAATCATTCGTTGACCTATAGGATAGTTGATAGAATTTTCACACAGgttagtcatt---------tcattttggcattcaaaccata---gctctttattaccaaacatgttcttatatt----agctcttttactgttattag-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110403756|gb|EC969496.1|EC969496
EST:     ATGGTAACCATGCACTTACCTATCGAATTGTTGATAGAATATTTTCCCAG                         ATTCCAAGAAAGTTTACGAGCAAGGTTGAAGGCAAGATGGGATATGAAGAT
genomic: ATGGTAACCATGCACTTACCTATCGAATTGTTGATAGAATATTTTCCCAGgtttgtgtct ... tttctctcagATTCCAAGAAAGTTTACGAGCAAGGTTGAAGGCAAGATGGGATATGAAGAT
EST: gi|161712742|gb|FC062314.1|FC062314
EST:     ATGGTAACCATGCACTTACCTATCGAATTGTTGATAGAATATTTTCCCAG                         ATTCCAAGAAAGTTTACGAGCAAGGTTGAAGGCCAGATGGGATATGAAGAT
genomic: ATGGTAACCATGCACTTACCTATCGAATTGTTGATAGAATATTTTCCCAGgtttgtgtct ... tttctctcagATTCCAAGAAAGTTTACGAGCAAGGTTGAAGGCAAGATGGGATATGAAGAT