Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACTTGGAATTGGGATAGTTCCATACAGTCCTCTTGGACGTGGGTTTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTGgtgtggaatctgacctatttccagccttttgtgtactcattttttgttccactaaactttctagtcaaaaacattattatggacctggatgattttgatatattcacctttgtcttacatatgaataagcatggcgaactgatgaccaaccttttgtcttatcag

Basic information

species Vitis vinifera
transcript Vv14s0030g01980.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g01980.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G024315_T01 (Zea mays), 5'ss of exon 5
AGAACTTGGAATTGGGATAGTTCCATACAGTCCTCTTGGACGTGGGTTTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTGgtgtggaatctgacctatttccagccttttgtgtactcattttttgttccactaaactttctagtcaaaaacattattatggacctggatgattttgatatattcacctttgtcttacatatgaataagcatggcgaactgatgaccaaccttttgtcttatcag
|||| | || ||||| || || ||||||||||||||||| |||||||||||||| || |  |  ||  | ||| | | | ||||  |  ||   ||||| |  | | |   |    || |  | |  |  || |||||| ||  |         ||| | |  ||||| |   || | |  ||| || |   |  | |  | |  |   |   | || | | |  |  | |  |                            
AGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagtattgacacagtcta--cctcagaata-tcatttctttct---------tttgttgcaaaaaaaacatttcttggtctgcatcaaaatctttttcttagttcacttacagattttactttggcttgtcag---------------------------

upper sequence: Vv14s0030g01980.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G40680.1 (Glycine max), 5'ss of exon 5
AGAACTTGGAATTGGGATAGTTCCATACAGTCCTCTTGGACGTGGGTTTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTGgtgtggaatctgacctat--ttccagccttttgtgtactcattttttgttccactaaactttctagtcaaaaacattattatggacctggatgattttgatatattcacctttgtcttacatatgaataagcatggcgaactgatgaccaaccttttgtcttatcag
 |||||||||||||| ||||| |||||||| || ||||| ||||| |||||||| ||||||| ||| |  |||| |   |||||||||| ||| ||||| |||| |   |||| |  |||   |      ||  ||  ||  |||||| |||||  | |||   ||  |                                                                                               
GGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTTTGGTGGCAAGGCTGTCGTAGAAAGTATACCTGCAAACAGTTTTCTGgtatggacttaaacctttctttctgacaacacttgcccttgttcattgttc-actaacatctctttccaccag----------------------------------------------------------------------------------------------

upper sequence: Vv14s0030g01980.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G30360.1 (Glycine max), 5'ss of exon 5
AGAACTTGGAATTGGGATAGTTCCATACAGTCCTCTTGGACGTGGGTTTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTGgtgtggaatctgacctatttccagccttttgtgtactcattttttgttccactaaactttctagtcaaaaacattattatggacctggatgattttgatatattcacctttgtcttacatatgaataagcatggcgaactgatgaccaaccttttgtcttatcag
 |||||||||||||| ||||| |||| |||||| ||||| ||||| |||||||| || ||||  ||    |||| |   |||||| ||| ||  ||||| || |             |||    ||| |||      |||||  | ||  |  |  | |  |    | |||  || || |  ||     || || | | |||    |||| |  ||||  ||||   ||||        | | |||| |  | | | |||||
GGAACTTGGAATTGGAATAGTACCATTCAGTCCCCTTGGCCGTGGATTTTTTGGTGGTAAGGGGGTCATAGAAAGTATACCTGCAGACAGTTATCTGgtatgaag------------ccaatagtttctgt------tttttaatacatca--cgatatgatatggatcatagttttgaaaatg-----ttatgttgttttc---cttgtttctcataacaata--tatggt-------taagcaacatcctttttcatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718812|gb|FC066644.1|FC066644
EST:     TTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTG                         AGATTAAATCCTAGGTTTCAAGGTGATAACTTTGAAAAGAACAAGAACATA
genomic: TTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTGgtgtggaatc ... gtcttatcagAGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATA
EST: gi|110374962|gb|EC939911.1|EC939911
EST:     TTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTG                         AGATTAAATCCTAGGTTTCAAGGTGATAACTTTGAAAAGAACAAGAACATA
genomic: TTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTGgtgtggaatc ... gtcttatcagAGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATA
EST: gi|77588053|gb|DV223238.1|DV223238
EST:     TTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTG                         AGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATA
genomic: TTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTGgtgtggaatc ... gtcttatcagAGATTAAATCCTAGGTTTCAAGGTGAGAACTTTGAAAAGAACAAGAACATA