Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTACTCTTTTGGTATGTGCATCTTGGAAATGGTCACTTTTGAATATCCATATAGTGAATGTACTCATCCTGCTCAGATCTACAAAAAGGTTATCTCGgttagtactcactccctatatctttctctcgttctctccatttgtttgctttgtctctatgtctccacattgacatgccttgttgctttag

Basic information

species Vitis vinifera
transcript Vv14s0030g01660.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g01660.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G43210.1 (Glycine max), 5'ss of exon 5
CATTTACTCTTTTGGTATGTGCATCTTGGAAATGGTCACTTTTGAATATCCATATAGTGAATGTACTCATCCTGCTCAGATCTACAAAAAGGTTATCTCGgttagtactcactccctatatctttctctcgttctctccatttgtttgctttgtctctatgtctccacattga-catgccttgttgctttag
||| || || ||||| |||||  | || ||||||||||| ||||||||||| ||||| |||||||  ||||| || || |||||||| || ||||| || || ||     | | | |   |||||||||  |    |  |   || |  |||       || |   | ||  | |     ||     |  ||
CATATATTCCTTTGGGATGTGTGTATTAGAAATGGTCACATTTGAATATCCTTATAGCGAATGTAGCCATCCAGCACAAATCTACAAGAAAGTTATTTCTgtaag-----attgctt---tctttctcttttctattgaagaagtgtttttttcaggagtggcaagatatcaatcgcattttacatttccag

upper sequence: Vv14s0030g01660.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G40550.1 (Glycine max), 5'ss of exon 3
CATTTACTCTTTTGGTATGTGCATCTTGGAAATGGTCACTTTTGAATATCCATATAGTGAATGTACTCATCCTGCTCAGATCTACAAAAAGGTTATCTCGgttagtactcactccctatatctttctctcgttctctccatttgtttgctttgtctcta-tgtctccacattga-catgccttgttgctttag
||| || || ||||| |||||  | || || |||||||| ||||||||||| ||||| |||||||  ||||| || || |||||||| || ||||| || || ||     | | | |   |||||| ||  |    |  |   || |  ||| ||   | || |   | ||  | |     ||     |  ||
CATATATTCCTTTGGGATGTGTGTATTAGAGATGGTCACGTTTGAATATCCTTATAGCGAATGTAGCCATCCAGCACAAATCTACAAGAAAGTTATTTCAgtaag-----attgctt---tctttcccttttctattgaagaagtgttttttttcaggagtggcaagatatcaatcgcattttacatttccag

upper sequence: Vv14s0030g01660.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G04910.1 (Arabidopsis thaliana), 5'ss of exon 5
CATTTACTCTTTTGGTATGTGCATCTTGGAAATGGTCACTTTTGAATATCCATATAGTGAATGTACTCATCCTGCTCAGATCTACAAAAAGGTTATCTCGgttagtactcactccctatatctttctctcgttctctccatttgtttgctttgtctctatgtctccacattgacatgccttgttgctttag
 || ||||| || |||||||| || ||||| ||||| || ||||| || || || ||||| |||||||||||||||||||||||||| || ||||| ||||| ||     |||| |   ||   |    |  |      ||      ||||  ||||| | | |    |  | |      |   | || ||
TATATACTCGTTCGGTATGTGTATTTTGGAGATGGTTACGTTTGATTACCCGTACAGTGAGTGTACTCATCCTGCTCAGATCTACAAGAAAGTTATGTCGgtgag-----actctccg-attactaaaacactaag---ataaaaaagcttcatctctttctgtttcaaaaggctaaaagttcggtttcag

upper sequence: Vv14s0030g01660.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G28080.2 (Arabidopsis thaliana), 5'ss of exon 5
CATTTACTCTTTTGGTATGTGCATCTTGGAAATGGTCACTTTTGAATATCCATATAGTGAATGTACTCATCCTGCTCAGATCTACAAAAAGGTTATCTCGgttagtactcactccctatatctttctctcgttctctccatttgtt-tgctttgtctctatgtctccacattgacatgccttgttgctttag
 |||||||| || ||||||||  | ||||||||||| || ||||| || || |||||||| ||| |||| ||||||||||| ||||| |  ||||| ||||| || |  ||  |      | |||  | || |     ||| | || || |  || |  |  |    | | | |  |  ||           
TATTTACTCGTTCGGTATGTGTGTTTTGGAAATGGTAACGTTTGATTACCCGTATAGTGAGTGTTCTCACCCTGCTCAGATTTACAAGAGAGTTATATCGgtaaggatccatcc-----gtgtttaccgcgattataacatctcttatgttgagttttaagattgttaaagttatctttctcag--------