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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAGgtcatcggatgtccatcccttgcaagttcctctgttatttctttgaaatctgttttgccccattccatgtaatactctattttatgattgattagattcgctataggttatgactgggtgtgctgtgatgacag

Basic information

species Vitis vinifera
transcript Vv14s0030g00750.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g00750.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G42870.2 (Glycine max), 5'ss of exon 4
GTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAGgtcatcggatgtccatcccttgcaagttcctctgttatttctttgaaatctgttttgccccattccatgtaatactctattttatgattgattagattcgctataggttatgactgggtgtgctgtgatgacag
||| ||| || | ||  |  | || |||||||| |||||||||||| || | ||||  ||||| |||||||||||||||||||| |    |||||  |   ||         | | |||||  ||| ||  |  ||   |    |  | || | || | | |||| |  || |                                           
GTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAGgtta----atgtcgtttttttttttaactttttattattg-tttaaagacaattccacgtactggcctg-actattgt-ttttgtatttcag------------------------------------------

upper sequence: Vv14s0030g00750.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G40260.2 (Glycine max), 5'ss of exon 4
GTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAGgtcatcggatgtccatcccttgcaagttcctctgttatttctttgaaatctgttttgccccattccatgtaatactctattttatgattgattagattcgctataggttatgactgggtgtgctgtgatgacag
| | ||| || | ||  |  | ||||||||||| |||||||||||  || | ||||  ||||| |||||||||||||| ||||| |  |   ||  ||   ||| || ||      || |||      ||  |    ||| |   ||    || |  | | ||| ||    |                                            
GCTGTATCGTGTCACGGTTGTCTTCTACCATGCATTTTATCTTCCTTTTTTGTATACAACATTCCTAGCAGACTTTTTTCAGgttaatgt-cgtttattttttg-aacttttataattgtttagagacaactttccatgcactggtctgactactgttttttttcatttcag--------------------------------------------

upper sequence: Vv14s0030g00750.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G05010.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAGgtcatcggatgtccatcccttgcaagttcctctgttatttctttgaaatctgttttgccccattccatgtaatactctattttatgattgattagattcgctataggttatgactgggtgtgctgtgatgacag
||| |||||  | ||||   |||  ||||| ||||| |||||||| ||| | ||| |||| ||||| ||||||||||||||||| |          ||||||   |    | | |||   | | |     ||| | |  | | | ||  | ||  |   ||| | |||       | |   || |||  | |  ||                    
GTTGTATGGGATCACAAGTGTTTGTTACCACGCCTTCTATCTTCCTCTTTTGTATGTTACTTTTCTTGCAGACTTTTTCCAGgtaa----------atccctcaaattaacatttgtctctccctc----tctctctctctctagtctctata-cataatatct-atgtacccacaaacatgcaataaatcaccacct------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30131882|gb|CB917221.1|CB917221
EST:     CCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAG                         GAGGAAGATTTGCATTTGGAGAATGTATACTACTCTGAGATGAAAGATGCC
genomic: CCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAGgtcatcggat ... gtgatgacagGAGGAAGATTTGCATTTGGAGAATGTATACTACTCTGAGATGAAAGATGCC
EST: gi|22012612|gb|BQ797646.1|BQ797646
EST:     CCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAG                         GAGGAAGATTTGCATTTGGAGAATGTATACTACTCTGAGATGAAAGATGCC
genomic: CCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAGgtcatcggat ... gtgatgacagGAGGAAGATTTGCATTTGGAGAATGTATACTACTCTGAGATGAAAGATGCC
EST: gi|110365218|gb|EC927851.1|EC927851
EST:     CCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAG                         GAGGAAGATTTGCATTTGGAGAATGTATACTACTCTGAGATGAAAGATGCC
genomic: CCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAGgtcatcggat ... gtgatgacagGAGGAAGATTTGCATTTGGAGAATGTATACTACTCTGAGATGAAAGATGCC
EST: gi|30133320|gb|CB918659.1|CB918659
EST:     CCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAG                         GAGGAAGATTTGCATTTGGAGAATGTATACTACTCTGAGATGAAAGATGCC
genomic: CCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAGgtcatcggat ... gtgatgacagGAGGAAGATTTGCATTTGGAGAATGTATACTACTCTGAGATGAAAGATGCC
EST: gi|110389708|gb|EC954568.1|EC954568
EST:     GCAGACTTTTTCCAG                         GAGGAAGATTTCCATTTGGAGAATGTATACTACTCTGAGATGAAAGATGCC
genomic: GCAGACTTTTTCCAGgtcatcggat ... gtgatgacagGAGGAAGATTTGCATTTGGAGAATGTATACTACTCTGAGATGAAAGATGCC
EST: gi|110703012|gb|EE079484.1|EE079484
EST:     CCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAG                         GAGGAAGATTTGCATTTGGAGAATGTATACTACTCTGAGATGAAAGATGCC
genomic: CCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAGgtcatcggat ... gtgatgacagGAGGAAGATTTGCATTTGGAGAATGTATACTACTCTGAGATGAAAGATGCC
EST: gi|110414461|gb|EC980293.1|EC980293
EST:     CCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAG                         GAGGAAGATTTGCATTTGGAGAATGTATACTACTCTGAGATGAAAGATGCC
genomic: CCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAGgtcatcggat ... gtgatgacagGAGGAAGATTTGCATTTGGAGAATGTATACTACTCTGAGATGAAAGATGCC
EST: gi|110394639|gb|EC959842.1|EC959842
EST:     CCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGATTTTTTCCAG                         GAGGAAGATTTGCATTTGGAGAATGTATACTACTCTGAGATGAAAGATGCC
genomic: CCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAGgtcatcggat ... gtgatgacagGAGGAAGATTTGCATTTGGAGAATGTATACTACTCTGAGATGAAAGATGCC