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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGGgtaattaatgaatctatttctcttattagttttttattatcatcctttcagttttttttcctttggtttaccaaattttatgtcatcatcctttgtttcctgagatatgtcaactttgaaaattcctttatcag

Basic information

species Vitis vinifera
transcript Vv14s0030g00550.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g00550.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 8
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGGgtaattaatgaatctatttctcttattagttttttattatcatcctttcagttttttttcctttggtttaccaaattttatgtcatcatcctttgtttcctgagatatgtcaactttgaaaattcctttatcag
||||| |||||||| |||||||| |||||||||||||  || ||  |||||||||| || ||||||| |||| |  ||||      | | | || |  || |  |       | |          | | |  | |||||   ||  ||||                                              
GATAATCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGCGATCATGTACTTATTGGgtaat-aatgcaattattagaa--actggcttatatttttgttgggcatggatgcaaaatacattgatatcaaaattcattgcaatcag---------------------------------------------

upper sequence: Vv14s0030g00550.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 8
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGGgtaattaatgaatctatttctcttattagttttttattatcatcc--tttcagttttttttcctttggtttaccaaattttatgtcatcatcctttgtttcctgagatatgtcaactttgaaaattcctttatcag
||||| |||||| | |||||||| |||||||||||||  || || ||||||||||| || |||||||  || | || ||| ||   | | | ||  | || |  |      |  | |||| |   |   |  | | ||   |  ||   |||   ||  |  | | ||                              
GATAATCCATTATTGATCGAGTGTTTTGATTTCAATAGCAGCGGCAATCATGTACTTATTGGgtaat-gataattcaattactgaaaattggttaatgtttttgttgggcctatgcttttctagttcaaggatgcaaagcgtattgatgtcaaatttattgccatcag------------------------------

upper sequence: Vv14s0030g00550.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G42790.1 (Glycine max), 5'ss of exon 8
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGGgtaattaatgaatctatttctcttattagttttttattatcatcctttcagttttttttcctttggtttaccaaattttatgtcatcatcctttgtttcc-tgagatatgtcaactttgaaaattcctttatcag
||||  |||||||| |||||||| |||||||||||||  || ||  |||||||||| || ||||||| |||| |  ||||           | | || || |    | |  | |||| |    | ||| | |  |||| |  ||  ||||   ||| || |  | ||                              
GATAGTCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGTGATCATGTACTTATTGGgtaat-aatgcaattattagaaacgggcttatatttttgttgggcatatacttttctggtttatggatgaa-aaatatattgatatcaaaatttattgcaatcag------------------------------

upper sequence: Vv14s0030g00550.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 8
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGGgtaattaatgaatctatttctcttattagttttttattatcatcctttcagttttttttcctttggtt-taccaaattttatgtcatcatcctttgtttcctgagatatgtcaactttgaaaattcctttatcag
|| | |||||| |||||||||||||| ||||| || || ||||||||||||| ||| || ||||||    | || || |  |  |     |  | | |  ||     ||| | |||| || |      || |||  ||  ||                                                       
GACACCCCATTGGTTATCGAGTGCTTAGATTTTAACACCAGTGGGAATCATGAACTTATTGGgtaacatgttaacctttaacattctaccgggtctcaccatt----tttgatttttgttactgacaattatactgaaccttgcag---------------------------------------------------